13template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
14 template<
class>
class Allocator,
class CellAssignor>
18 num_real_comm_comps = 0;
19 int comm_comps_start = 0;
20 if constexpr (!ParticleType::is_soa_particle) {
21 comm_comps_start += AMREX_SPACEDIM + NStructReal;
23 for (
int i = comm_comps_start; i < comm_comps_start + NumRealComps(); ++i) {
24 if (h_redistribute_real_comp[i]) {++num_real_comm_comps;}
27 num_int_comm_comps = 0;
28 comm_comps_start = 2 + NStructInt;
29 for (
int i = comm_comps_start; i < comm_comps_start + NumIntComps(); ++i) {
30 if (h_redistribute_int_comp[i]) {++num_int_comm_comps;}
33 if constexpr (ParticleType::is_soa_particle) {
34 particle_size =
sizeof(uint64_t);
38 superparticle_size = particle_size +
39 num_real_comm_comps*
sizeof(ParticleReal) + num_int_comm_comps*
sizeof(
int);
42template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
43 template<
class>
class Allocator,
class CellAssignor>
47 levelDirectoriesCreated =
false;
52 if constexpr (ParticleType::is_soa_particle)
54 h_redistribute_real_comp.resize(NArrayReal,
true);
56 h_redistribute_real_comp.resize(AMREX_SPACEDIM + NStructReal + NArrayReal,
true);
58 h_redistribute_int_comp.resize(2 + NStructInt + NArrayInt,
true);
63 m_soa_rdata_names.clear();
64 for (
int i=0; i<NArrayReal; ++i)
66 m_soa_rdata_names.push_back(getDefaultCompNameReal<ParticleType>(i));
68 m_soa_idata_names.clear();
69 for (
int i=0; i<NArrayInt; ++i)
71 m_soa_idata_names.push_back(getDefaultCompNameInt<ParticleType>(i));
78 "sizeof ParticleType is not a multiple of sizeof RealType");
83 if (
pp.
queryarr(
"tile_size", tilesize, 0, AMREX_SPACEDIM)) {
84 for (
int i=0; i<AMREX_SPACEDIM; ++i) { tile_size[i] = tilesize[i]; }
87 static_assert(std::is_standard_layout<ParticleType>::value,
88 "Particle type must be standard layout");
92 pp.
query(
"use_prepost", usePrePost);
93 pp.
query(
"do_unlink", doUnlink);
94 pp.
queryAdd(
"do_mem_efficient_sort", memEfficientSort);
95 pp.
queryAdd(
"use_comms_arena", use_comms_arena);
102 typename ParticleType,
105 template<
class>
class Allocator,
110 std::vector<std::string>
const & rdata_name, std::vector<std::string>
const & idata_name
117 std::set<std::string>
const unique_r_names(rdata_name.begin(), rdata_name.end());
118 std::set<std::string>
const unique_i_names(idata_name.begin(), idata_name.end());
122 for (
int i=0; i<NArrayReal; ++i)
124 m_soa_rdata_names.at(i) = rdata_name.at(i);
126 for (
int i=0; i<NArrayInt; ++i)
128 m_soa_idata_names.at(i) = idata_name.at(i);
133 typename ParticleType,
136 template<
class>
class Allocator,
142 return std::find(m_soa_rdata_names.begin(), m_soa_rdata_names.end(), name) != std::end(m_soa_rdata_names);
145template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
146 template<
class>
class Allocator,
class CellAssignor>
150 return std::find(m_soa_idata_names.begin(), m_soa_idata_names.end(), name) != std::end(m_soa_idata_names);
154 typename ParticleType,
157 template<
class>
class Allocator,
163 const auto it = std::find(m_soa_rdata_names.begin(), m_soa_rdata_names.end(), name);
165 if (it == m_soa_rdata_names.end())
167 throw std::runtime_error(
"GetRealCompIndex: Component " + name +
" does not exist!");
171 return std::distance(m_soa_rdata_names.begin(), it);
176 typename ParticleType,
179 template<
class>
class Allocator,
185 const auto it = std::find(m_soa_idata_names.begin(), m_soa_idata_names.end(), name);
187 if (it == m_soa_idata_names.end())
189 throw std::runtime_error(
"GetIntCompIndex: Component " + name +
" does not exist!");
193 return std::distance(m_soa_idata_names.begin(), it);
197template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
198 template<
class>
class Allocator,
class CellAssignor>
199template <
typename P,
typename Assignor>
204 const auto& domain = geom.
Domain();
208 return Assignor{}(p, plo, dxi, domain);
211template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
212 template<
class>
class Allocator,
class CellAssignor>
221 int local_grid)
const
227 lev_max = finestLevel();
232 AMREX_ASSERT(nGrow == 0 || (nGrow >= 0 && lev_min == lev_max));
234 std::vector< std::pair<int, Box> > isects;
236 for (
int lev = lev_max; lev >= lev_min; lev--) {
237 const IntVect& iv = Index(p, lev);
238 if (lev == pld.
m_lev) {
252 const BoxArray& ba = ParticleBoxArray(lev);
255 if (local_grid < 0) {
256 bool findfirst = (nGrow == 0) ?
true :
false;
258 grid = isects.empty() ? -1 : isects[0].first;
259 if (nGrow > 0 && isects.size() > 1) {
260 for (
auto & isect : isects) {
262 for (
int dir = 0; dir < AMREX_SPACEDIM; ++dir) {
274 grid = (*redistribute_mask_ptr)[local_grid](iv, 0);
292template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
293 template<
class>
class Allocator,
class CellAssignor>
301 int local_grid)
const
306 if (!Geom(0).isAnyPeriodic()) {
return false; }
309 lev_max = finestLevel();
317 p_prime.
pos(1) = p.pos(1);,
318 p_prime.
pos(2) = p.pos(2));
319 if (PeriodicShift(p_prime)) {
320 std::vector< std::pair<int,Box> > isects;
321 for (
int lev = lev_max; lev >= lev_min; lev--) {
325 const BoxArray& ba = ParticleBoxArray(lev);
328 if (local_grid < 0) {
331 grid = isects.empty() ? -1 : isects[0].first;
334 if (ba[local_grid].contains(iv))
341 grid = isects.empty() ? -1 : isects[0].first;
344 grid = (*redistribute_mask_ptr)[local_grid](Index(p, lev), 0);
351 p.pos(1) = p_prime.
pos(1);,
352 p.pos(2) = p_prime.
pos(2););
371template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
372 template<
class>
class Allocator,
class CellAssignor>
378 const auto& geom = Geom(0);
379 const auto plo = geom.ProbLoArray();
380 const auto phi = geom.ProbHiArray();
381 const auto rlo = geom.ProbLoArrayInParticleReal();
382 const auto rhi = geom.ProbHiArrayInParticleReal();
383 const auto is_per = geom.isPeriodicArray();
388template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
389 template<
class>
class Allocator,
class CellAssignor>
399 bool ok = Where(p, pld);
401 if (!ok && Geom(0).isAnyPeriodic())
412 amrex::AllPrint()<<
"Invalidating out-of-domain particle: " << p <<
'\n';
417 p.id().make_invalid();
423template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
424 template<
class>
class Allocator,
class CellAssignor>
429 m_particles.reserve(maxLevel()+1);
432template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
433 template<
class>
class Allocator,
class CellAssignor>
438 int nlevs = std::max(0, finestLevel()+1);
439 m_particles.resize(nlevs);
442template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
443 template<
class>
class Allocator,
class CellAssignor>
447 int lev_min,
int lev_max,
int nGrow,
int local_grid)
const
450 if (Geom(0).outsideRoundoffDomain(
AMREX_D_DECL(p.pos(0), p.pos(1), p.pos(2))))
453 success = EnforcePeriodicWhere(p, pld, lev_min, lev_max, local_grid);
454 if (!success && lev_min == 0)
457 p.id().make_invalid();
463 success = Where(p, pld, lev_min, lev_max, 0, local_grid);
468 success = (nGrow > 0) && Where(p, pld, lev_min, lev_min, nGrow);
474 amrex::Abort(
"ParticleContainer::locateParticle(): invalid particle.");
478template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
479 template<
class>
class Allocator,
class CellAssignor>
484 for (
int lev = 0; lev <= finestLevel(); lev++) {
485 nparticles += NumberOfParticlesAtLevel(lev,only_valid,
true);
493template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
494 template<
class>
class Allocator,
class CellAssignor>
498 AMREX_ASSERT(lev >= 0 && lev <
int(m_particles.size()));
501 ParticleDistributionMap(lev));
505 int gid = pti.index();
508 const auto& ptile = ParticlesAt(lev, pti);
509 const int np = ptile.numParticles();
510 auto const ptd = ptile.getConstParticleTileData();
514 using ReduceTuple =
typename decltype(reduce_data)::Type;
516 reduce_op.
eval(np, reduce_data,
519 return (ptd.id(i).is_valid()) ? 1 : 0;
522 int np_valid = amrex::get<0>(reduce_data.
value(reduce_op));
523 np_per_grid_local[gid] += np_valid;
526 np_per_grid_local[gid] += pti.numParticles();
530 Vector<Long> nparticles(np_per_grid_local.
size(), 0);
533 for (ParConstIterType pti(*
this, lev); pti.isValid(); ++pti)
535 nparticles[pti.index()] = np_per_grid_local[pti.index()];
549template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
550 template<
class>
class Allocator,
class CellAssignor>
555 if (level < 0 || level >=
int(m_particles.size())) {
return nparticles; }
560 using ReduceTuple =
typename decltype(reduce_data)::Type;
562 for (
const auto& kv : GetParticles(level)) {
563 const auto& ptile = kv.second;
564 auto const ptd = ptile.getConstParticleTileData();
566 reduce_op.
eval(ptile.numParticles(), reduce_data,
569 return (ptd.id(i).is_valid()) ? 1 : 0;
573 nparticles =
static_cast<Long
>(amrex::get<0>(reduce_data.value(reduce_op)));
576 for (
const auto& kv : GetParticles(level)) {
577 const auto& ptile = kv.second;
578 nparticles += ptile.numParticles();
589template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
590 template<
class>
class Allocator,
class CellAssignor>
591template <
typename I, std::enable_if_t<std::is_
integral_v<I> && (sizeof(I) >= sizeof(Long)),
int> FOO>
601 for (ParConstIterType pti(*
this, lev); pti.isValid(); ++pti)
603 int gid = pti.index();
604 mem[gid] +=
static_cast<I
>(pti.capacity());
612template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
620 for (
unsigned lev = 0; lev < m_particles.size(); lev++) {
621 const auto& pmap = m_particles[lev];
622 for (
const auto& kv : pmap) {
623 const auto& ptile = kv.second;
624 cnt += ptile.numParticles();
628 Long mn = cnt, mx = mn;
631 const Long sz =
sizeof(ParticleType)+NumRealComps()*
sizeof(ParticleReal)+NumIntComps()*
sizeof(int);
640 amrex::Print() <<
"ParticleContainer spread across MPI nodes - bytes (num particles): [Min: "
648 <<
" (" << cnt <<
")]\n";
653 return {mn*sz, mx*sz, cnt*sz};
656template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
657 template<
class>
class Allocator,
class CellAssignor>
664 for (
unsigned lev = 0; lev < m_particles.size(); lev++) {
665 const auto& pmap = m_particles[lev];
666 for (
const auto& kv : pmap) {
667 const auto& ptile = kv.second;
668 cnt += ptile.capacity();
672 Long mn = cnt, mx = mn;
683 amrex::Print() <<
"ParticleContainer spread across MPI nodes - bytes: [Min: "
694 return {mn, mx, cnt};
697template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
698 template<
class>
class Allocator,
class CellAssignor>
702 for (
unsigned lev = 0; lev < m_particles.size(); lev++) {
703 auto& pmap = m_particles[lev];
704 for (
auto& kv : pmap) {
705 auto& ptile = kv.second;
706 ptile.shrink_to_fit();
717template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
718 template<
class>
class Allocator,
class CellAssignor>
725 if (m_particles.empty()) {
return; }
726 AMREX_ASSERT(lev >= 0 && lev <
int(m_particles.size()));
729 const auto& geom = Geom(lev);
730 const auto plo = geom.ProbLoArray();
731 const auto dxi = geom.InvCellSizeArray();
732 const auto domain = geom.Domain();
737 const auto p = ptd[ip];
739 IntVect iv = assignor(p, plo, dxi, domain);
744template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
745 template<
class>
class Allocator,
class CellAssignor>
749 BL_PROFILE(
"ParticleContainer::IncrementWithTotal(lev)");
751 return TotalNumberOfParticles(
true, local);
754template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
755 template<
class>
class Allocator,
class CellAssignor>
759 BL_PROFILE(
"ParticleContainer::RemoveParticlesAtLevel()");
760 if (level >=
int(this->m_particles.size())) {
return; }
762 if (!this->m_particles[level].empty())
768template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
769 template<
class>
class Allocator,
class CellAssignor>
773 BL_PROFILE(
"ParticleContainer::RemoveParticlesNotAtFinestLevel()");
774 AMREX_ASSERT(this->finestLevel()+1 ==
int(this->m_particles.size()));
778 for (
unsigned lev = 0; lev < m_particles.size() - 1; ++lev) {
779 auto& pmap = m_particles[lev];
781 for (
auto& kv : pmap) {
782 const auto& pbx = kv.second;
783 cnt += pbx.numParticles();
792 if (this->m_verbose > 1 && cnt > 0) {
794 <<
" particles not in finest level\n";
810 template <
typename SrcData>
812 int operator() (
const SrcData& src,
int src_i)
const noexcept
821 template <
typename DstData,
typename SrcData>
824 int src_i,
int dst_i)
const noexcept
834template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
835 template<
class>
class Allocator,
class CellAssignor>
837ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
838::CreateVirtualParticles (
int level,
AoS& virts)
const
841 CreateVirtualParticles(level, ptile);
845template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
846 template<
class>
class Allocator,
class CellAssignor>
851 BL_PROFILE(
"ParticleContainer::CreateVirtualParticles()");
855 if (level >=
static_cast<int>(m_particles.size())) {
859 std::string aggregation_type = AggregationType();
860 int aggregation_buffer = AggregationBuffer();
862 if (aggregation_type ==
"None")
867 const auto& src_tile = ParticlesAt(level, pti);
869 auto np = src_tile.numParticles();
870 virts.
resize(virts_offset+np);
875 if (aggregation_type ==
"Cell")
878 int nComp = AMREX_SPACEDIM + NStructReal + NArrayReal;
881 MultiFab mf(ParticleBoxArray(level), ParticleDistributionMap(level),
nComp, nGhost);
883 nComp = 1 + NStructInt + NArrayInt;
884 iMultiFab imf(ParticleBoxArray(level), ParticleDistributionMap(level),
nComp, nGhost);
886 const auto& geom = Geom(level);
887 const auto plo = geom.ProbLoArray();
888 const auto dxi = geom.InvCellSizeArray();
889 const auto domain = geom.Domain();
892 bl_buffer.
complementIn(Geom(level).Domain(), ParticleBoxArray(level));
893 BoxArray buffer(std::move(bl_buffer));
894 buffer.
grow(aggregation_buffer);
897 locator.
build(buffer, geom);
907 if(assign_buffer_grid(iv)==-1)
910 for (
int i = 0; i < NArrayReal; ++i)
912 amrex::Gpu::Atomic::AddNoRet(&partData(iv,AMREX_SPACEDIM+NStructReal+i), partData(iv,AMREX_SPACEDIM)!=0.0 ?
static_cast<Real
>(0) :
static_cast<Real
>(p.rdata(NStructReal+i)));
915 for (
int i = 0; i < AMREX_SPACEDIM; ++i)
920 for (
int i = 1; i < NStructReal; ++i)
925 for (
int i = 0; i < 1; ++i)
941 if(assign_buffer_grid(iv)==-1)
944 if(partData(iv,0)==0)
948 for (
int i = 0; i < NStructInt; ++i)
952 for (
int i = 0; i < NArrayInt; ++i)
966 const auto bx = mfi.tilebox();
967 const auto partData = mf.
array(mfi);
968 const auto imf_arr = imf.
array(mfi);
971 auto *offsets_ptr = offsets.
dataPtr();
976 if(imf_arr(i,j,k,0)!=0)
978 const auto idx = last_offset + offsets_ptr[
980 +(j-imf_arr.begin.y)*imf_arr.jstride
981 +(k-imf_arr.begin.z)*imf_arr.kstride)
990 p.rdata(0) =
static_cast<ParticleReal
>(partData(i,j,k,AMREX_SPACEDIM));;
992 for (
int n = 0; n < AMREX_SPACEDIM; ++n)
994 p.pos(n) =
static_cast<ParticleReal
>(partData(i,j,k,n) / p.rdata(0));
997 for (
int n = 1; n < NStructReal; ++n)
999 p.rdata(n) =
static_cast<ParticleReal
>(partData(i,j,k,AMREX_SPACEDIM+n) / p.rdata(0));
1002 for (
int n = 0; n < NArrayReal; ++n)
1004 dst.rdata(n)[idx] =
static_cast<ParticleReal
>(partData(i,j,k,AMREX_SPACEDIM+NStructReal+n));
1007 for (
int n = 0; n < NStructInt; ++n)
1009 p.idata(n) = imf_arr(i,j,k,1+n);
1012 for (
int n = 0; n < NArrayInt; ++n)
1014 dst.idata(n)[idx] = imf_arr(i,j,k,1+NStructInt+n);
1019 last_offset+=next_offset;
1024 auto virts_offset = last_offset;
1027 const auto& src_tile = ParticlesAt(level, pti);
1029 auto np = src_tile.numParticles();
1030 virts.
resize(virts_offset+np);
1034 virts.
resize(virts_offset);
1053 template <
typename SrcData>
1059 const auto p_boxes = amrex::get<0>(tup_min);
1060 const auto p_boxes_max = amrex::get<0>(tup_max);
1061 const auto p_levs_max = amrex::get<1>(tup_max);
1062 return p_boxes_max >=0 && p_boxes ==
m_gid && p_levs_max ==
m_lev_max;
1069 template <
typename DstData,
typename SrcData>
1072 int src_i,
int dst_i)
const noexcept
1081template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1082 template<
class>
class Allocator,
class CellAssignor>
1084ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1085::CreateGhostParticles (
int level,
int nGrow,
AoS& ghosts)
const
1088 CreateGhostParticles(level, nGrow, ptile);
1092template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1093 template<
class>
class Allocator,
class CellAssignor>
1098 BL_PROFILE(
"ParticleContainer::CreateGhostParticles()");
1102 if (level >=
static_cast<int>(m_particles.size())) {
1106 if (! m_particle_locator.isValid(GetParGDB())) {
1107 m_particle_locator.build(GetParGDB());
1110 m_particle_locator.setGeometry(GetParGDB());
1115 const auto& src_tile = ParticlesAt(level, pti);
1116 int gid = pti.index();
1118 auto np = src_tile.numParticles();
1119 ghosts.
resize(ghost_offset+np);
1122 ghosts.
resize(ghost_offset);
1126template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1127 template<
class>
class Allocator,
class CellAssignor>
1132 BL_PROFILE(
"ParticleContainer::clearParticles()");
1134 for (
int lev = 0; lev < static_cast<int>(m_particles.size()); ++lev)
1136 for (
auto& kv : m_particles[lev]) { kv.second.resize(0); }
1141template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1142 template<
class>
class Allocator,
class CellAssignor>
1143template <class PCType, std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo>
1152template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1153 template<
class>
class Allocator,
class CellAssignor>
1154template <class PCType, std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo>
1163template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1164 template<
class>
class Allocator,
class CellAssignor>
1165template <
class F,
class PCType,
1166 std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo,
1167 std::enable_if_t<! std::is_integral_v<F>,
int> bar>
1172 BL_PROFILE(
"ParticleContainer::copyParticles");
1174 addParticles(other, std::forward<F>(f), local);
1177template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1178 template<
class>
class Allocator,
class CellAssignor>
1179template <
class F,
class PCType,
1180 std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo,
1181 std::enable_if_t<! std::is_integral_v<F>,
int> bar>
1186 BL_PROFILE(
"ParticleContainer::addParticles");
1189 for (
int lev = 0; lev < other.numLevels(); ++lev)
1192 const auto& plevel_other = other.GetParticles(lev);
1193 for(
MFIter mfi = other.MakeMFIter(lev); mfi.isValid(); ++mfi)
1195 auto index = std::make_pair(mfi.index(), mfi.LocalTileIndex());
1196 if(plevel_other.find(index) == plevel_other.end()) {
continue; }
1198 DefineAndReturnParticleTile(lev, mfi.index(), mfi.LocalTileIndex());
1203#pragma omp parallel if (Gpu::notInLaunchRegion())
1205 for (
int lev = 0; lev < other.numLevels(); ++lev)
1207 const auto& plevel_other = other.GetParticles(lev);
1208 for(
MFIter mfi = other.MakeMFIter(lev); mfi.isValid(); ++mfi)
1210 auto index = std::make_pair(mfi.index(), mfi.LocalTileIndex());
1211 if(plevel_other.find(index) == plevel_other.end()) {
continue; }
1214 auto& ptile = ParticlesAt(lev, mfi.index(), mfi.LocalTileIndex());
1215 const auto& ptile_other = plevel_other.at(index);
1216 auto np = ptile_other.numParticles();
1217 if (np == 0) {
continue; }
1219 auto dst_index = ptile.numParticles();
1220 ptile.resize(dst_index + np);
1224 ptile.resize(dst_index + count);
1228 if (! local) { Redistribute(); }
1234template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1235 template<
class>
class Allocator,
class CellAssignor>
1237ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1238::Redistribute (
int lev_min,
int lev_max,
int nGrow,
int local,
bool remove_negative)
1245 RedistributeGPU(lev_min, lev_max, nGrow, local, remove_negative);
1249 RedistributeCPU(lev_min, lev_max, nGrow, local, remove_negative);
1252 RedistributeCPU(lev_min, lev_max, nGrow, local, remove_negative);
1258template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1259 template<
class>
class Allocator,
class CellAssignor>
1260template <
class index_type>
1262ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1263::ReorderParticles (
int lev,
const MFIter& mfi,
const index_type* permutations)
1265 auto& ptile = ParticlesAt(lev, mfi);
1266 const size_t np = ptile.numParticles();
1267 const size_t np_total = np + ptile.numNeighborParticles();
1269 if (memEfficientSort) {
1270#if defined(AMREX_USE_CUDA) && defined(_WIN32)
1271 if (!ParticleType::is_soa_particle) {
1273 if constexpr (!ParticleType::is_soa_particle) {
1276 using tmp_t = std::conditional_t<
sizeof(
ParticleType)%8 == 0,
1277 uint64_t, uint32_t>;
1278 constexpr std::size_t nchunks =
sizeof(
ParticleType) /
sizeof(tmp_t);
1280 auto* ptmp = tmp.data();
1281 auto* paos = (tmp_t*)(ptile.getParticleTileData().m_aos);
1282 for (std::size_t ichunk = 0; ichunk < nchunks; ++ichunk) {
1286 ptmp[i] = paos[permutations[i]*nchunks+ichunk];
1290 paos[i*nchunks+ichunk] = ptmp[i];
1295 typename SoA::IdCPU tmp_idcpu;
1296 if constexpr (has_polymorphic_allocator) {
1297 tmp_idcpu.setArena(arena());
1299 tmp_idcpu.resize(np_total);
1300 auto src = ptile.GetStructOfArrays().GetIdCPUData().data();
1301 uint64_t* dst = tmp_idcpu.data();
1304 dst[i] = i < np ? src[permutations[i]] : src[i];
1309 ptile.GetStructOfArrays().GetIdCPUData().swap(tmp_idcpu);
1313 RealVector tmp_real;
1314 if constexpr (has_polymorphic_allocator) {
1315 tmp_real.setArena(arena());
1317 tmp_real.resize(np_total);
1318 for (
int comp = 0; comp < NArrayReal + m_num_runtime_real; ++comp) {
1319 auto src = ptile.GetStructOfArrays().GetRealData(comp).data();
1320 ParticleReal* dst = tmp_real.data();
1323 dst[i] = i < np ? src[permutations[i]] : src[i];
1328 ptile.GetStructOfArrays().GetRealData(comp).swap(tmp_real);
1333 if constexpr (has_polymorphic_allocator) {
1334 tmp_int.setArena(arena());
1336 tmp_int.resize(np_total);
1337 for (
int comp = 0; comp < NArrayInt + m_num_runtime_int; ++comp) {
1338 auto src = ptile.GetStructOfArrays().GetIntData(comp).data();
1339 int* dst = tmp_int.data();
1342 dst[i] = i < np ? src[permutations[i]] : src[i];
1347 ptile.GetStructOfArrays().GetIntData(comp).swap(tmp_int);
1350 ParticleTileType ptile_tmp;
1351 ptile_tmp.define(m_num_runtime_real, m_num_runtime_int,
1352 &m_soa_rdata_names, &m_soa_idata_names, arena());
1353 ptile_tmp.resize(np_total);
1358 ptile.swap(ptile_tmp);
1362template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1363 template<
class>
class Allocator,
class CellAssignor>
1370template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1371 template<
class>
class Allocator,
class CellAssignor>
1376 BL_PROFILE(
"ParticleContainer::SortParticlesByBin()");
1380 for (
int lev = 0; lev < numLevels(); ++lev)
1385 const auto domain = geom.
Domain();
1389 auto& ptile = ParticlesAt(lev, mfi);
1390 const size_t np = ptile.numParticles();
1396 m_bins.build(np, ptile.getParticleTileData(), ntiles,
1398 ReorderParticles(lev, mfi, m_bins.permutationPtr());
1403template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1404 template<
class>
class Allocator,
class CellAssignor>
1409 BL_PROFILE(
"ParticleContainer::SortParticlesForDeposition()");
1411 for (
int lev = 0; lev < numLevels(); ++lev)
1417 const auto& ptile = ParticlesAt(lev, mfi);
1418 const size_t np = ptile.numParticles();
1422 using index_type =
typename decltype(m_bins)::index_type;
1424 PermutationForDeposition<index_type>(perm, np, ptile, box, geom, idx_type);
1425 ReorderParticles(lev, mfi, perm.
dataPtr());
1433template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1434 template<
class>
class Allocator,
class CellAssignor>
1446 BL_PROFILE(
"ParticleContainer::RedistributeGPU()");
1449 int theEffectiveFinestLevel = m_gdb->finestLevel();
1450 while (!m_gdb->LevelDefined(theEffectiveFinestLevel)) { theEffectiveFinestLevel--; }
1452 if (
int(m_particles.size()) < theEffectiveFinestLevel+1) {
1454 amrex::Print() <<
"ParticleContainer::Redistribute() resizing containers from "
1455 << m_particles.size() <<
" to "
1456 << theEffectiveFinestLevel + 1 <<
'\n';
1458 m_particles.resize(theEffectiveFinestLevel+1);
1459 m_dummy_mf.resize(theEffectiveFinestLevel+1);
1462 for (
int lev = 0; lev < theEffectiveFinestLevel+1; ++lev) { RedefineDummyMF(lev); }
1464 int finest_lev_particles;
1465 if (lev_max == -1) {
1466 lev_max = theEffectiveFinestLevel;
1467 finest_lev_particles = m_particles.size() - 1;
1469 finest_lev_particles = lev_max;
1473 this->defineBufferMap();
1475 if (! m_particle_locator.isValid(GetParGDB())) { m_particle_locator.build(GetParGDB()); }
1476 m_particle_locator.setGeometry(GetParGDB());
1477 auto assign_grid = m_particle_locator.getGridAssignor();
1481 int num_levels = finest_lev_particles + 1;
1484 const auto plo = Geom(0).ProbLoArray();
1485 const auto phi = Geom(0).ProbHiArray();
1486 const auto rlo = Geom(0).ProbLoArrayInParticleReal();
1487 const auto rhi = Geom(0).ProbHiArrayInParticleReal();
1488 const auto is_per = Geom(0).isPeriodicArray();
1489 for (
int lev = lev_min; lev <= finest_lev_particles; ++lev)
1491 auto& plev = m_particles[lev];
1492 for (
auto& kv : plev)
1494 int gid = kv.first.first;
1495 int tid = kv.first.second;
1496 auto index = std::make_pair(gid, tid);
1498 auto& src_tile = plev[index];
1499 const size_t np = src_tile.numParticles();
1504 plo, phi, rlo, rhi, is_per, lev, gid, tid,
1505 lev_min, lev_max, nGrow, remove_negative);
1507 int num_move = np - num_stay;
1508 new_sizes[lev][gid] = num_stay;
1509 op.
resize(gid, lev, num_move);
1511 auto p_boxes = op.
m_boxes[lev][gid].dataPtr();
1515 auto ptd = src_tile.getParticleTileData();
1519 const auto p = ptd[i + num_stay];
1521 if (!p.id().is_valid())
1528 const auto tup = assign_grid(p, lev_min, lev_max, nGrow,
1529 std::forward<CellAssignor>(CellAssignor{}));
1530 p_boxes[i] = amrex::get<0>(tup);
1531 p_levs[i] = amrex::get<1>(tup);
1534 p_src_indices[i] = i+num_stay;
1542 plan.
build(*
this, op, h_redistribute_int_comp,
1543 h_redistribute_real_comp, local);
1549 if (use_comms_arena) {
1557 for (
int lev = lev_min; lev <= lev_max; ++lev)
1559 auto& plev = m_particles[lev];
1560 for (
auto& kv : plev)
1562 int gid = kv.first.first;
1563 int tid = kv.first.second;
1564 auto index = std::make_pair(gid, tid);
1565 auto& tile = plev[index];
1566 tile.resize(new_sizes[lev][gid]);
1570 for (
int lev = lev_min; lev <= lev_max; lev++)
1575 if (
int(m_particles.size()) > theEffectiveFinestLevel+1) {
1576 if (m_verbose > 0) {
1577 amrex::Print() <<
"ParticleContainer::Redistribute() resizing m_particles from "
1578 << m_particles.size() <<
" to " << theEffectiveFinestLevel+1 <<
'\n';
1582 m_particles.resize(theEffectiveFinestLevel + 1);
1583 m_dummy_mf.resize(theEffectiveFinestLevel + 1);
1590 unpackBuffer(*
this, plan, snd_buffer, RedistributeUnpackPolicy());
1592 unpackRemotes(*
this, plan, rcv_buffer, RedistributeUnpackPolicy());
1597 Gpu::PinnedVector<char> pinned_snd_buffer;
1598 Gpu::PinnedVector<char> pinned_rcv_buffer;
1600 if (snd_buffer.arena()->isPinned()) {
1605 pinned_snd_buffer.resize(snd_buffer.
size());
1612 rcv_buffer.
resize(pinned_rcv_buffer.size());
1613 unpackBuffer(*
this, plan, snd_buffer, RedistributeUnpackPolicy());
1616 unpackRemotes(*
this, plan, rcv_buffer, RedistributeUnpackPolicy());
1629template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1630 template<
class>
class Allocator,
class CellAssignor>
1632ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1633::RedistributeCPU (
int lev_min,
int lev_max,
int nGrow,
int local,
bool remove_negative)
1635 BL_PROFILE(
"ParticleContainer::RedistributeCPU()");
1640 if (local > 0) { BuildRedistributeMask(0, local); }
1644 int theEffectiveFinestLevel = m_gdb->finestLevel();
1646 while (!m_gdb->LevelDefined(theEffectiveFinestLevel)) {
1647 theEffectiveFinestLevel--;
1650 if (
int(m_particles.size()) < theEffectiveFinestLevel+1) {
1652 amrex::Print() <<
"ParticleContainer::Redistribute() resizing containers from "
1653 << m_particles.size() <<
" to "
1654 << theEffectiveFinestLevel + 1 <<
'\n';
1656 m_particles.resize(theEffectiveFinestLevel+1);
1657 m_dummy_mf.resize(theEffectiveFinestLevel+1);
1662 for (
int lev = 0; lev < theEffectiveFinestLevel+1; ++lev) {
1663 RedefineDummyMF(lev);
1666 int finest_lev_particles;
1667 if (lev_max == -1) {
1668 lev_max = theEffectiveFinestLevel;
1669 finest_lev_particles = m_particles.size() - 1;
1671 finest_lev_particles = lev_max;
1676 std::map<int, Vector<char> > not_ours;
1681 std::map<int, Vector<Vector<char> > > tmp_remote;
1684 tmp_local.resize(theEffectiveFinestLevel+1);
1685 soa_local.resize(theEffectiveFinestLevel+1);
1688 for (
int lev = lev_min; lev <= lev_max; lev++) {
1692 tmp_local[lev][index].resize(num_threads);
1693 soa_local[lev][index].resize(num_threads);
1694 for (
int t = 0; t < num_threads; ++t) {
1695 soa_local[lev][index][t].define(m_num_runtime_real, m_num_runtime_int,
1696 &m_soa_rdata_names, &m_soa_idata_names);
1697 if constexpr (has_polymorphic_allocator) {
1698 if constexpr (ParticleType::is_soa_particle) {
1699 soa_local[lev][index][t].GetIdCPUData().setArena(arena());
1701 tmp_local[lev][index][t].setArena(arena());
1703 for (
int j = 0; j < soa_local[lev][index][t].NumRealComps(); ++j) {
1704 soa_local[lev][index][t].GetRealData(j).setArena(arena());
1706 for (
int j = 0; j < soa_local[lev][index][t].NumIntComps(); ++j) {
1707 soa_local[lev][index][t].GetIntData(j).setArena(arena());
1714 for (
int i = 0; i < neighbor_procs.size(); ++i) {
1715 tmp_remote[neighbor_procs[i]].resize(num_threads);
1719 tmp_remote[i].resize(num_threads);
1725 for (
int lev = lev_min; lev <= finest_lev_particles; lev++) {
1726 auto& pmap = m_particles[lev];
1730 for (
auto& kv : pmap)
1732 grid_tile_ids.push_back(kv.first);
1733 ptile_ptrs.push_back(&(kv.second));
1737#pragma omp parallel for
1739 for (
int pmap_it = 0; pmap_it < static_cast<int>(ptile_ptrs.
size()); ++pmap_it)
1742 int grid = grid_tile_ids[pmap_it].first;
1743 int tile = grid_tile_ids[pmap_it].second;
1744 auto& soa = ptile_ptrs[pmap_it]->GetStructOfArrays();
1745 auto& aos = ptile_ptrs[pmap_it]->GetArrayOfStructs();
1751 unsigned npart = ptile_ptrs[pmap_it]->numParticles();
1754 if constexpr (!ParticleType::is_soa_particle){
1757 Long last = npart - 1;
1759 while (pindex <= last) {
1762 if ((remove_negative ==
false) && (!p.id().is_valid())) {
1767 if (!p.id().is_valid())
1769 aos[pindex] = aos[last];
1770 for (
int comp = 0; comp < NumRealComps(); comp++) {
1771 soa.GetRealData(comp)[pindex] = soa.GetRealData(comp)[last];
1773 for (
int comp = 0; comp < NumIntComps(); comp++) {
1774 soa.GetIntData(comp)[pindex] = soa.GetIntData(comp)[last];
1776 correctCellVectors(last, pindex, grid, aos[pindex]);
1781 locateParticle(p, pld, lev_min, lev_max, nGrow, local ? grid : -1);
1783 particlePostLocate(p, pld, lev);
1785 if (!p.id().is_valid())
1787 aos[pindex] = aos[last];
1788 for (
int comp = 0; comp < NumRealComps(); comp++) {
1789 soa.GetRealData(comp)[pindex] = soa.GetRealData(comp)[last];
1791 for (
int comp = 0; comp < NumIntComps(); comp++) {
1792 soa.GetIntData(comp)[pindex] = soa.GetIntData(comp)[last];
1794 correctCellVectors(last, pindex, grid, aos[pindex]);
1800 if (who == MyProc) {
1805 tmp_local[pld.
m_lev][index][thread_num].push_back(p);
1806 for (
int comp = 0; comp < NumRealComps(); ++comp) {
1807 RealVector& arr = soa_local[pld.
m_lev][index][thread_num].GetRealData(comp);
1808 arr.push_back(soa.GetRealData(comp)[pindex]);
1810 for (
int comp = 0; comp < NumIntComps(); ++comp) {
1811 IntVector& arr = soa_local[pld.
m_lev][index][thread_num].GetIntData(comp);
1812 arr.push_back(soa.GetIntData(comp)[pindex]);
1815 p.id().make_invalid();
1819 auto& particles_to_send = tmp_remote[who][thread_num];
1820 auto old_size = particles_to_send.
size();
1821 auto new_size = old_size + superparticle_size;
1822 particles_to_send.resize(new_size);
1823 std::memcpy(&particles_to_send[old_size], &p, particle_size);
1824 char* dst = &particles_to_send[old_size] + particle_size;
1825 int array_comp_start = 0;
1826 if constexpr (!ParticleType::is_soa_particle) {
1827 array_comp_start = AMREX_SPACEDIM + NStructReal;
1829 for (
int comp = 0; comp < NumRealComps(); comp++) {
1830 if (h_redistribute_real_comp[array_comp_start + comp]) {
1831 std::memcpy(dst, &soa.GetRealData(comp)[pindex],
sizeof(ParticleReal));
1832 dst +=
sizeof(ParticleReal);
1835 array_comp_start = 2 + NStructInt;
1836 for (
int comp = 0; comp < NumIntComps(); comp++) {
1837 if (h_redistribute_int_comp[array_comp_start + comp]) {
1838 std::memcpy(dst, &soa.GetIntData(comp)[pindex],
sizeof(
int));
1843 p.id().make_invalid();
1846 if (!p.id().is_valid())
1848 aos[pindex] = aos[last];
1849 for (
int comp = 0; comp < NumRealComps(); comp++) {
1850 soa.GetRealData(comp)[pindex] = soa.GetRealData(comp)[last];
1852 for (
int comp = 0; comp < NumIntComps(); comp++) {
1853 soa.GetIntData(comp)[pindex] = soa.GetIntData(comp)[last];
1855 correctCellVectors(last, pindex, grid, aos[pindex]);
1863 aos().erase(aos().
begin() + last + 1, aos().
begin() + npart);
1864 for (
int comp = 0; comp < NumRealComps(); comp++) {
1866 rdata.erase(rdata.begin() + last + 1, rdata.begin() + npart);
1868 for (
int comp = 0; comp < NumIntComps(); comp++) {
1869 IntVector& idata = soa.GetIntData(comp);
1870 idata.erase(idata.begin() + last + 1, idata.begin() + npart);
1876 auto particle_tile = ptile_ptrs[pmap_it];
1878 Long last = npart - 1;
1880 auto ptd = particle_tile->getParticleTileData();
1881 while (pindex <= last) {
1884 if ((remove_negative ==
false) && (!ptd.id(pindex).is_valid())) {
1889 if (!ptd.id(pindex).is_valid()){
1890 soa.GetIdCPUData()[pindex] = soa.GetIdCPUData()[last];
1891 for (
int comp = 0; comp < NumRealComps(); comp++) {
1892 soa.GetRealData(comp)[pindex] = soa.GetRealData(comp)[last];
1894 for (
int comp = 0; comp < NumIntComps(); comp++) {
1895 soa.GetIntData(comp)[pindex] = soa.GetIntData(comp)[last];
1897 correctCellVectors(last, pindex, grid, ptd[pindex]);
1902 locateParticle(p, pld, lev_min, lev_max, nGrow, local ? grid : -1);
1904 particlePostLocate(p, pld, lev);
1906 if (!ptd.id(pindex).is_valid()) {
1907 soa.GetIdCPUData()[pindex] = soa.GetIdCPUData()[last];
1908 for (
int comp = 0; comp < NumRealComps(); comp++) {
1909 soa.GetRealData(comp)[pindex] = soa.GetRealData(comp)[last];
1911 for (
int comp = 0; comp < NumIntComps(); comp++) {
1912 soa.GetIntData(comp)[pindex] = soa.GetIntData(comp)[last];
1914 correctCellVectors(last, pindex, grid, ptd[pindex]);
1920 if (who == MyProc) {
1926 auto& arr = soa_local[pld.
m_lev][index][thread_num].GetIdCPUData();
1927 arr.push_back(soa.GetIdCPUData()[pindex]);
1929 for (
int comp = 0; comp < NumRealComps(); ++comp) {
1930 RealVector& arr = soa_local[pld.
m_lev][index][thread_num].GetRealData(comp);
1931 arr.push_back(soa.GetRealData(comp)[pindex]);
1933 for (
int comp = 0; comp < NumIntComps(); ++comp) {
1934 IntVector& arr = soa_local[pld.
m_lev][index][thread_num].GetIntData(comp);
1935 arr.push_back(soa.GetIntData(comp)[pindex]);
1938 ptd.id(pindex).make_invalid();
1942 auto& particles_to_send = tmp_remote[who][thread_num];
1943 auto old_size = particles_to_send.
size();
1944 auto new_size = old_size + superparticle_size;
1945 particles_to_send.resize(new_size);
1947 char* dst = &particles_to_send[old_size];
1949 std::memcpy(dst, &soa.GetIdCPUData()[pindex],
sizeof(uint64_t));
1950 dst +=
sizeof(uint64_t);
1952 int array_comp_start = 0;
1953 if constexpr (!ParticleType::is_soa_particle) {
1954 array_comp_start = AMREX_SPACEDIM + NStructReal;
1956 for (
int comp = 0; comp < NumRealComps(); comp++) {
1957 if (h_redistribute_real_comp[array_comp_start + comp]) {
1958 std::memcpy(dst, &soa.GetRealData(comp)[pindex],
sizeof(ParticleReal));
1959 dst +=
sizeof(ParticleReal);
1962 array_comp_start = 2 + NStructInt;
1963 for (
int comp = 0; comp < NumIntComps(); comp++) {
1964 if (h_redistribute_int_comp[array_comp_start + comp]) {
1965 std::memcpy(dst, &soa.GetIntData(comp)[pindex],
sizeof(
int));
1969 ptd.id(pindex).make_invalid();
1972 if (!ptd.id(pindex).is_valid()){
1973 soa.GetIdCPUData()[pindex] = soa.GetIdCPUData()[last];
1974 for (
int comp = 0; comp < NumRealComps(); comp++) {
1975 soa.GetRealData(comp)[pindex] = soa.GetRealData(comp)[last];
1977 for (
int comp = 0; comp < NumIntComps(); comp++) {
1978 soa.GetIntData(comp)[pindex] = soa.GetIntData(comp)[last];
1980 correctCellVectors(last, pindex, grid, ptd[pindex]);
1989 auto& iddata = soa.GetIdCPUData();
1990 iddata.erase(iddata.begin() + last + 1, iddata.begin() + npart);
1992 for (
int comp = 0; comp < NumRealComps(); comp++) {
1994 rdata.erase(rdata.begin() + last + 1, rdata.begin() + npart);
1996 for (
int comp = 0; comp < NumIntComps(); comp++) {
1997 IntVector& idata = soa.GetIntData(comp);
1998 idata.erase(idata.begin() + last + 1, idata.begin() + npart);
2005 for (
int lev = lev_min; lev <= lev_max; lev++) {
2010 for (
int lev = lev_min; lev <= lev_max; lev++) {
2013 if constexpr(!ParticleType::is_soa_particle) {
2018 for (pmap_it=tmp_local[lev].
begin(); pmap_it != tmp_local[lev].end(); pmap_it++)
2020 DefineAndReturnParticleTile(lev, pmap_it->first.first, pmap_it->first.second);
2021 grid_tile_ids.push_back(pmap_it->first);
2022 pvec_ptrs.push_back(&(pmap_it->second));
2026#pragma omp parallel for
2028 for (
int pit = 0; pit < static_cast<int>(pvec_ptrs.
size()); ++pit)
2030 auto index = grid_tile_ids[pit];
2031 auto& ptile = ParticlesAt(lev, index.first, index.second);
2032 auto& aos = ptile.GetArrayOfStructs();
2033 auto& soa = ptile.GetStructOfArrays();
2034 auto& aos_tmp = *(pvec_ptrs[pit]);
2035 auto& soa_tmp = soa_local[lev][index];
2036 for (
int i = 0; i < num_threads; ++i) {
2037 aos.insert(aos.end(), aos_tmp[i].begin(), aos_tmp[i].end());
2038 aos_tmp[i].erase(aos_tmp[i].
begin(), aos_tmp[i].end());
2039 for (
int comp = 0; comp < NumRealComps(); ++comp) {
2041 RealVector& tmp = soa_tmp[i].GetRealData(comp);
2042 arr.insert(arr.end(), tmp.begin(), tmp.end());
2043 tmp.erase(tmp.begin(), tmp.end());
2045 for (
int comp = 0; comp < NumIntComps(); ++comp) {
2047 IntVector& tmp = soa_tmp[i].GetIntData(comp);
2048 arr.insert(arr.end(), tmp.begin(), tmp.end());
2049 tmp.erase(tmp.begin(), tmp.end());
2057 for (
auto soa_map_it=soa_local[lev].
begin(); soa_map_it != soa_local[lev].end(); soa_map_it++)
2059 DefineAndReturnParticleTile(lev, soa_map_it->first.first, soa_map_it->first.second);
2060 grid_tile_ids.push_back(soa_map_it->first);
2064#pragma omp parallel for
2066 for (
int pit = 0; pit < static_cast<int>(grid_tile_ids.
size()); ++pit)
2068 auto index = grid_tile_ids[pit];
2069 auto& ptile = ParticlesAt(lev, index.first, index.second);
2070 auto& soa = ptile.GetStructOfArrays();
2071 auto& soa_tmp = soa_local[lev][index];
2072 for (
int i = 0; i < num_threads; ++i) {
2074 auto& arr = soa.GetIdCPUData();
2075 auto& tmp = soa_tmp[i].GetIdCPUData();
2076 arr.insert(arr.end(), tmp.begin(), tmp.end());
2077 tmp.erase(tmp.begin(), tmp.end());
2079 for (
int comp = 0; comp < NumRealComps(); ++comp) {
2081 RealVector& tmp = soa_tmp[i].GetRealData(comp);
2082 arr.insert(arr.end(), tmp.begin(), tmp.end());
2083 tmp.erase(tmp.begin(), tmp.end());
2085 for (
int comp = 0; comp < NumIntComps(); ++comp) {
2087 IntVector& tmp = soa_tmp[i].GetIntData(comp);
2088 arr.insert(arr.end(), tmp.begin(), tmp.end());
2089 tmp.erase(tmp.begin(), tmp.end());
2096 for (
auto& map_it : tmp_remote) {
2097 int who = map_it.first;
2103 for (
auto& kv : tmp_remote)
2105 dest_proc_ids.push_back(kv.first);
2106 pbuff_ptrs.push_back(&(kv.second));
2110#pragma omp parallel for
2112 for (
int pmap_it = 0; pmap_it < static_cast<int>(pbuff_ptrs.
size()); ++pmap_it)
2114 int who = dest_proc_ids[pmap_it];
2116 for (
int i = 0; i < num_threads; ++i) {
2117 not_ours[who].insert(not_ours[who].
end(), tmp[i].begin(), tmp[i].end());
2118 tmp[i].erase(tmp[i].
begin(), tmp[i].end());
2124 if (
int(m_particles.size()) > theEffectiveFinestLevel+1) {
2126 if (m_verbose > 0) {
2127 amrex::Print() <<
"ParticleContainer::Redistribute() resizing m_particles from "
2128 << m_particles.size() <<
" to " << theEffectiveFinestLevel+1 <<
'\n';
2132 m_particles.resize(theEffectiveFinestLevel + 1);
2133 m_dummy_mf.resize(theEffectiveFinestLevel + 1);
2140 RedistributeMPI(not_ours, lev_min, lev_max, nGrow, local);
2145 if (m_verbose > 0) {
2156 amrex::Print() <<
"ParticleContainer::Redistribute() time: " << stoptime <<
"\n\n";
2163template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2164 template<
class>
class Allocator,
class CellAssignor>
2168 int lev_min,
int lev_max,
int nGrow,
int local)
2170 BL_PROFILE(
"ParticleContainer::RedistributeMPI()");
2176 using buffer_type =
unsigned long long;
2178 std::map<int, Vector<buffer_type> > mpi_snd_data;
2179 for (
const auto& kv : not_ours)
2181 auto nbt = (kv.second.size() +
sizeof(buffer_type)-1)/
sizeof(buffer_type);
2182 mpi_snd_data[kv.first].resize(nbt);
2183 std::memcpy((
char*) mpi_snd_data[kv.first].data(), kv.second.data(), kv.second.size());
2187 const int NNeighborProcs = neighbor_procs.size();
2197 BuildRedistributeMask(0, local);
2207 if ((! local) && NumSnds == 0) {
2213 Long tot_snds_this_proc = 0;
2214 Long tot_rcvs_this_proc = 0;
2215 for (
int i = 0; i < NNeighborProcs; ++i) {
2216 tot_snds_this_proc += Snds[neighbor_procs[i]];
2217 tot_rcvs_this_proc += Rcvs[neighbor_procs[i]];
2219 if ( (tot_snds_this_proc == 0) && (tot_rcvs_this_proc == 0) ) {
2227 std::size_t TotRcvInts = 0;
2228 std::size_t TotRcvBytes = 0;
2229 for (
int i = 0; i < NProcs; ++i) {
2231 RcvProc.push_back(i);
2232 rOffset.push_back(TotRcvInts);
2233 TotRcvBytes += Rcvs[i];
2234 auto nbt = (Rcvs[i] +
sizeof(buffer_type)-1)/
sizeof(buffer_type);
2239 const auto nrcvs =
static_cast<int>(RcvProc.
size());
2247 for (
int i = 0; i < nrcvs; ++i) {
2248 const auto Who = RcvProc[i];
2249 const auto offset = rOffset[i];
2250 const auto Cnt = (Rcvs[Who] +
sizeof(buffer_type)-1)/
sizeof(buffer_type);
2252 AMREX_ASSERT(Cnt <
size_t(std::numeric_limits<int>::max()));
2260 for (
const auto& kv : mpi_snd_data) {
2261 const auto Who = kv.first;
2262 const auto Cnt = kv.second.size();
2277 int npart = TotRcvBytes / superparticle_size;
2285 for (
int j = 0; j < nrcvs; ++j)
2287 const auto offset = rOffset[j];
2288 const auto Who = RcvProc[j];
2289 const auto Cnt = Rcvs[Who] / superparticle_size;
2290 for (
int i = 0; i < int(Cnt); ++i)
2292 char* pbuf = ((
char*) &recvdata[
offset]) + i*superparticle_size;
2296 if constexpr (ParticleType::is_soa_particle) {
2297 std::memcpy(&p.
m_idcpu, pbuf,
sizeof(uint64_t));
2299 ParticleReal pos[AMREX_SPACEDIM];
2300 std::memcpy(&pos[0], pbuf +
sizeof(uint64_t), AMREX_SPACEDIM*
sizeof(ParticleReal));
2308 bool success = Where(p, pld, lev_min, lev_max, 0);
2311 success = (nGrow > 0) && Where(p, pld, lev_min, lev_min, nGrow);
2316 amrex::Abort(
"RedistributeMPI_locate:: invalid particle.");
2319 rcv_levs[ipart] = pld.
m_lev;
2320 rcv_grid[ipart] = pld.
m_grid;
2321 rcv_tile[ipart] = pld.
m_tile;
2331#ifndef AMREX_USE_GPU
2333 for (
int i = 0; i < nrcvs; ++i)
2335 const auto offset = rOffset[i];
2336 const auto Who = RcvProc[i];
2337 const auto Cnt = Rcvs[Who] / superparticle_size;
2338 for (
int j = 0; j < int(Cnt); ++j)
2340 auto& ptile = m_particles[rcv_levs[ipart]][std::make_pair(rcv_grid[ipart],
2342 char* pbuf = ((
char*) &recvdata[
offset]) + j*superparticle_size;
2344 if constexpr (ParticleType::is_soa_particle) {
2346 std::memcpy(&idcpudata, pbuf,
sizeof(uint64_t));
2347 pbuf +=
sizeof(uint64_t);
2348 ptile.GetStructOfArrays().GetIdCPUData().push_back(idcpudata);
2356 int array_comp_start = 0;
2357 if constexpr (!ParticleType::is_soa_particle) {
2358 array_comp_start = AMREX_SPACEDIM + NStructReal;
2360 for (
int comp = 0; comp < NumRealComps(); ++comp) {
2361 if (h_redistribute_real_comp[array_comp_start + comp]) {
2363 std::memcpy(&rdata, pbuf,
sizeof(ParticleReal));
2364 pbuf +=
sizeof(ParticleReal);
2365 ptile.push_back_real(comp, rdata);
2367 ptile.push_back_real(comp, 0.0);
2371 array_comp_start = 2 + NStructInt;
2372 for (
int comp = 0; comp < NumIntComps(); ++comp) {
2373 if (h_redistribute_int_comp[array_comp_start + comp]) {
2375 std::memcpy(&idata, pbuf,
sizeof(
int));
2376 pbuf +=
sizeof(int);
2377 ptile.push_back_int(comp, idata);
2379 ptile.push_back_int(comp, 0);
2388 host_particles.reserve(15);
2389 host_particles.resize(finestLevel()+1);
2392 std::vector<Gpu::HostVector<ParticleReal> > > > host_real_attribs;
2393 host_real_attribs.reserve(15);
2394 host_real_attribs.resize(finestLevel()+1);
2397 std::vector<Gpu::HostVector<int> > > > host_int_attribs;
2398 host_int_attribs.reserve(15);
2399 host_int_attribs.resize(finestLevel()+1);
2402 host_idcpu.reserve(15);
2403 host_idcpu.resize(finestLevel()+1);
2406 for (
int i = 0; i < nrcvs; ++i)
2408 const auto offset = rOffset[i];
2409 const auto Who = RcvProc[i];
2410 const auto Cnt = Rcvs[Who] / superparticle_size;
2411 for (
auto j =
decltype(Cnt)(0); j < Cnt; ++j)
2413 int lev = rcv_levs[ipart];
2414 std::pair<int, int> ind(std::make_pair(rcv_grid[ipart], rcv_tile[ipart]));
2416 char* pbuf = ((
char*) &recvdata[
offset]) + j*superparticle_size;
2418 host_real_attribs[lev][ind].resize(NumRealComps());
2419 host_int_attribs[lev][ind].resize(NumIntComps());
2421 if constexpr (ParticleType::is_soa_particle) {
2423 std::memcpy(&idcpudata, pbuf,
sizeof(uint64_t));
2424 pbuf +=
sizeof(uint64_t);
2425 host_idcpu[lev][ind].push_back(idcpudata);
2430 host_particles[lev][ind].push_back(p);
2433 host_real_attribs[lev][ind].resize(NumRealComps());
2434 host_int_attribs[lev][ind].resize(NumIntComps());
2437 int array_comp_start = 0;
2438 if constexpr (!ParticleType::is_soa_particle) {
2439 array_comp_start = AMREX_SPACEDIM + NStructReal;
2441 for (
int comp = 0; comp < NumRealComps(); ++comp) {
2442 if (h_redistribute_real_comp[array_comp_start + comp]) {
2444 std::memcpy(&rdata, pbuf,
sizeof(Real));
2445 pbuf +=
sizeof(Real);
2446 host_real_attribs[lev][ind][comp].push_back(rdata);
2448 host_real_attribs[lev][ind][comp].push_back(0.0);
2453 array_comp_start = 2 + NStructInt;
2454 for (
int comp = 0; comp < NumIntComps(); ++comp) {
2455 if (h_redistribute_int_comp[array_comp_start + comp]) {
2457 std::memcpy(&idata, pbuf,
sizeof(
int));
2458 pbuf +=
sizeof(int);
2459 host_int_attribs[lev][ind][comp].push_back(idata);
2461 host_int_attribs[lev][ind][comp].push_back(0);
2468 for (
int host_lev = 0; host_lev < static_cast<int>(host_particles.
size()); ++host_lev)
2470 for (
auto& kv : host_particles[host_lev]) {
2471 auto grid = kv.first.first;
2472 auto tile = kv.first.second;
2473 const auto& src_tile = kv.second;
2475 auto& dst_tile = GetParticles(host_lev)[std::make_pair(grid,tile)];
2476 auto old_size = dst_tile.
size();
2477 auto new_size = old_size + src_tile.size();
2478 dst_tile.resize(new_size);
2480 if constexpr (ParticleType::is_soa_particle) {
2482 host_idcpu[host_lev][std::make_pair(grid,tile)].
begin(),
2483 host_idcpu[host_lev][std::make_pair(grid,tile)].
end(),
2484 dst_tile.GetStructOfArrays().GetIdCPUData().begin() + old_size);
2487 src_tile.begin(), src_tile.end(),
2488 dst_tile.GetArrayOfStructs().begin() + old_size);
2491 for (
int i = 0; i < NumRealComps(); ++i) {
2493 host_real_attribs[host_lev][std::make_pair(grid,tile)][i].
begin(),
2494 host_real_attribs[host_lev][std::make_pair(grid,tile)][i].
end(),
2495 dst_tile.GetStructOfArrays().GetRealData(i).begin() + old_size);
2498 for (
int i = 0; i < NumIntComps(); ++i) {
2500 host_int_attribs[host_lev][std::make_pair(grid,tile)][i].
begin(),
2501 host_int_attribs[host_lev][std::make_pair(grid,tile)][i].
end(),
2502 dst_tile.GetStructOfArrays().GetIntData(i).begin() + old_size);
2517template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2518 template<
class>
class Allocator,
class CellAssignor>
2524 if (lev_max == -1) {
2525 lev_max = finestLevel();
2531template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2532 template<
class>
class Allocator,
class CellAssignor>
2539 AddParticlesAtLevel(ptile, level, nGrow);
2542template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2543 template<
class>
class Allocator,
class CellAssignor>
2548 BL_PROFILE(
"ParticleContainer::AddParticlesAtLevel()");
2550 if (
int(m_particles.size()) < level+1)
2554 amrex::Print() <<
"ParticleContainer::AddParticlesAtLevel resizing m_particles from "
2555 << m_particles.size()
2559 m_particles.resize(level+1);
2560 m_dummy_mf.resize(level+1);
2561 for (
int lev = 0; lev < level+1; ++lev) {
2562 RedefineDummyMF(lev);
2566 auto& ptile = DefineAndReturnParticleTile(level, 0, 0);
2567 int old_np = ptile.size();
2568 int num_to_add = particles.
size();
2569 int new_np = old_np + num_to_add;
2570 ptile.resize(new_np);
2572 Redistribute(level, level, nGrow);
2577template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2578 template<
class>
class Allocator,
class CellAssignor>
2585 int particle_lvl_offset)
const
2587 BL_PROFILE(
"ParticleContainer::AssignCellDensitySingleLevel()");
2589 if (rho_index != 0) {
amrex::Abort(
"AssignCellDensitySingleLevel only works if rho_index = 0"); }
2593 if (OnSameGrids(lev, mf_to_be_filled)) {
2596 mf_pointer = &mf_to_be_filled;
2601 mf_pointer =
new MultiFab(ParticleBoxArray(lev),
2602 ParticleDistributionMap(lev),
2603 ncomp, mf_to_be_filled.
nGrow());
2610 if (mf_pointer->
nGrow() < 1) {
2611 amrex::Error(
"Must have at least one ghost cell when in AssignCellDensitySingleLevel");
2616 const auto dxi = Geom(lev).InvCellSizeArray();
2617 const auto plo = Geom(lev).ProbLoArray();
2618 const auto pdxi = Geom(lev + particle_lvl_offset).InvCellSizeArray();
2620 if (Geom(lev).isAnyPeriodic() && ! Geom(lev).isAllPeriodic())
2622 amrex::Error(
"AssignCellDensitySingleLevel: problem must be periodic in no or all directions");
2629#pragma omp parallel if (Gpu::notInLaunchRegion())
2634 const Long np = pti.numParticles();
2635 auto ptd = pti.GetParticleTile().getConstParticleTileData();
2637 auto rhoarr = fab.
array();
2642 tile_box = pti.tilebox();
2644 local_rho.
resize(tile_box,ncomp);
2646 rhoarr = local_rho.
array();
2650 if (particle_lvl_offset == 0)
2681 for (
int n = 1; n < ncomp; n++)
2685 (*mf_pointer)[mfi].protected_divide<
RunOn::Device>((*mf_pointer)[mfi],0,n,1);
2692 const Real* dx = Geom(lev).CellSize();
2695 mf_pointer->
mult(Real(1.0)/vol, 0, 1, mf_pointer->
nGrow());
2699 if (mf_pointer != &mf_to_be_filled)
2701 mf_to_be_filled.
ParallelCopy(*mf_pointer,0,0,ncomp,0,0);
2712 amrex::Print() <<
"ParticleContainer::AssignCellDensitySingleLevel) time: "
2713 << stoptime <<
'\n';
2717template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2718 template<
class>
class Allocator,
class CellAssignor>
2723 int old_size = m_num_runtime_real;
2725 m_runtime_comps_defined = (new_size > 0);
2726 m_num_runtime_real = new_size;
2727 int cur_size = h_redistribute_real_comp.size();
2728 h_redistribute_real_comp.resize(cur_size-old_size+new_size, communicate);
2731 for (
int lev = 0; lev < numLevels(); ++lev) {
2733 auto& tile = DefineAndReturnParticleTile(lev, pti);
2734 auto np = tile.numParticles();
2735 if (np > 0 && new_size > old_size) {
2736 auto& soa = tile.GetStructOfArrays();
2743template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2744 template<
class>
class Allocator,
class CellAssignor>
2749 int old_size = m_num_runtime_int;
2751 m_runtime_comps_defined = (new_size > 0);
2752 m_num_runtime_int = new_size;
2753 int cur_size = h_redistribute_int_comp.size();
2754 h_redistribute_int_comp.resize(cur_size-old_size+new_size, communicate);
2757 for (
int lev = 0; lev < numLevels(); ++lev) {
2759 auto& tile = DefineAndReturnParticleTile(lev, pti);
2760 auto np = tile.numParticles();
2761 if (np > 0 && new_size > old_size) {
2762 auto& soa = tile.GetStructOfArrays();
#define BL_PROFILE_VAR_START(vname)
Definition AMReX_BLProfiler.H:562
#define BL_PROFILE(a)
Definition AMReX_BLProfiler.H:551
#define BL_PROFILE_VAR_STOP(vname)
Definition AMReX_BLProfiler.H:563
#define BL_PROFILE_SYNC_STOP()
Definition AMReX_BLProfiler.H:645
#define BL_PROFILE_SYNC_START_TIMED(fname)
Definition AMReX_BLProfiler.H:644
#define BL_PROFILE_VAR_NS(fname, vname)
Definition AMReX_BLProfiler.H:561
#define AMREX_ALWAYS_ASSERT_WITH_MESSAGE(EX, MSG)
Definition AMReX_BLassert.H:49
#define AMREX_ASSERT(EX)
Definition AMReX_BLassert.H:38
#define AMREX_ALWAYS_ASSERT(EX)
Definition AMReX_BLassert.H:50
#define AMREX_FORCE_INLINE
Definition AMReX_Extension.H:119
#define AMREX_FOR_1D(...)
Definition AMReX_GpuLaunchMacrosC.nolint.H:97
#define AMREX_HOST_DEVICE_FOR_1D(...)
Definition AMReX_GpuLaunchMacrosC.nolint.H:105
#define AMREX_GPU_DEVICE
Definition AMReX_GpuQualifiers.H:18
#define AMREX_GPU_HOST_DEVICE
Definition AMReX_GpuQualifiers.H:20
amrex::ParmParse pp
Input file parser instance for the given namespace.
Definition AMReX_HypreIJIface.cpp:15
Array4< int const > offset
Definition AMReX_HypreMLABecLap.cpp:1089
#define AMREX_D_TERM(a, b, c)
Definition AMReX_SPACE.H:172
#define AMREX_D_DECL(a, b, c)
Definition AMReX_SPACE.H:171
Print on all processors of the default communicator.
Definition AMReX_Print.H:117
BaseFab< T > & atomicAdd(const BaseFab< T > &x) noexcept
Atomic FAB addition (a[i] <- a[i] + b[i]).
Definition AMReX_BaseFab.H:2478
Array4< T const > array() const noexcept
Definition AMReX_BaseFab.H:375
void setVal(T const &x, const Box &bx, int dcomp, int ncomp) noexcept
The setVal functions set sub-regions in the BaseFab to a constant value. This most general form speci...
Definition AMReX_BaseFab.H:1393
A collection of Boxes stored in an Array.
Definition AMReX_BoxArray.H:551
IndexType ixType() const noexcept
Return index type of this BoxArray.
Definition AMReX_BoxArray.H:841
BoxArray & grow(int n)
Grow each Box in the BoxArray by the specified amount.
Definition AMReX_BoxArray.cpp:699
std::vector< std::pair< int, Box > > intersections(const Box &bx) const
Return intersections of Box and BoxArray.
Definition AMReX_BoxArray.cpp:1179
Box getCellCenteredBox(int index) const noexcept
Return cell-centered box at element index of this BoxArray.
Definition AMReX_BoxArray.H:731
static bool SameRefs(const BoxArray &lhs, const BoxArray &rhs)
whether two BoxArrays share the same data
Definition AMReX_BoxArray.H:824
A class for managing a List of Boxes that share a common IndexType. This class implements operations ...
Definition AMReX_BoxList.H:52
BoxList & complementIn(const Box &b, const BoxList &bl)
Definition AMReX_BoxList.cpp:307
__host__ __device__ BoxND & grow(int i) noexcept
Definition AMReX_Box.H:630
__host__ __device__ bool contains(const IntVectND< dim > &p) const noexcept
Returns true if argument is contained within BoxND.
Definition AMReX_Box.H:207
GpuArray< Real, 3 > InvCellSizeArray() const noexcept
Definition AMReX_CoordSys.H:87
A Fortran Array of REALs.
Definition AMReX_FArrayBox.H:229
void resize(const Box &b, int N=1, Arena *ar=nullptr)
For debugging purposes we hide BaseFab version and do some extra work.
Definition AMReX_FArrayBox.cpp:178
int size() const noexcept
Return the number of FABs in the FabArray.
Definition AMReX_FabArrayBase.H:110
int nGrow(int direction=0) const noexcept
Return the grow factor that defines the region of definition.
Definition AMReX_FabArrayBase.H:78
const DistributionMapping & DistributionMap() const noexcept
Return constant reference to associated DistributionMapping.
Definition AMReX_FabArrayBase.H:131
const BoxArray & boxArray() const noexcept
Return a constant reference to the BoxArray that defines the valid region associated with this FabArr...
Definition AMReX_FabArrayBase.H:95
void ParallelCopy(const FabArray< FAB > &src, const Periodicity &period=Periodicity::NonPeriodic(), CpOp op=FabArrayBase::COPY)
Definition AMReX_FabArray.H:845
Array4< typename FabArray< FAB >::value_type const > array(const MFIter &mfi) const noexcept
Definition AMReX_FabArray.H:561
void setVal(value_type val)
Set all components in the entire region of each FAB to val.
Definition AMReX_FabArray.H:2609
void SumBoundary(const Periodicity &period=Periodicity::NonPeriodic(), bool deterministic=false)
Sum values in overlapped cells.
Definition AMReX_FabArray.H:3540
Rectangular problem domain geometry.
Definition AMReX_Geometry.H:73
const Box & Domain() const noexcept
Returns our rectangular domain.
Definition AMReX_Geometry.H:210
GpuArray< Real, 3 > ProbLoArray() const noexcept
Definition AMReX_Geometry.H:186
static void streamSynchronize() noexcept
Definition AMReX_GpuDevice.cpp:750
__host__ __device__ bool cellCentered() const noexcept
True if the IndexTypeND is CELL based in all directions.
Definition AMReX_IndexType.H:101
__host__ static __device__ constexpr IntVectND< dim > TheZeroVector() noexcept
This static member function returns a reference to a constant IntVectND object, all of whose dim argu...
Definition AMReX_IntVect.H:677
a one-thingy-per-box distributed object
Definition AMReX_LayoutData.H:13
Definition AMReX_MFIter.H:57
int LocalTileIndex() const noexcept
The current local tile index in the current grid;.
Definition AMReX_MFIter.H:150
bool isValid() const noexcept
Is the iterator valid i.e. is it associated with a FAB?
Definition AMReX_MFIter.H:141
Box validbox() const noexcept
Return the valid Box in which the current tile resides.
Definition AMReX_MFIter.H:132
int index() const noexcept
The index into the underlying BoxArray of the current FAB.
Definition AMReX_MFIter.H:144
A collection (stored as an array) of FArrayBox objects.
Definition AMReX_MultiFab.H:38
void mult(Real val, int comp, int num_comp, int nghost=0)
Scales the value of each cell in the specified subregion of the MultiFab by the scalar val (a[i] <- a...
Definition AMReX_MultiFab.cpp:1417
Definition AMReX_PODVector.H:297
size_type size() const noexcept
Definition AMReX_PODVector.H:637
void resize(size_type a_new_size, GrowthStrategy strategy=GrowthStrategy::Poisson)
Definition AMReX_PODVector.H:717
T * dataPtr() noexcept
Definition AMReX_PODVector.H:659
Definition AMReX_ParIter.H:144
Definition AMReX_ParIter.H:115
MPI_Request req() const
Definition AMReX_ParallelDescriptor.H:74
Parse Parameters From Command Line and Input Files.
Definition AMReX_ParmParse.H:343
int queryAdd(std::string_view name, T &ref)
If name is found, the value in the ParmParse database will be stored in the ref argument....
Definition AMReX_ParmParse.H:1037
int queryarr(std::string_view name, std::vector< int > &ref, int start_ix=FIRST, int num_val=ALL) const
Same as queryktharr() but searches for last occurrence of name.
Definition AMReX_ParmParse.cpp:1479
int query(std::string_view name, bool &ref, int ival=FIRST) const
Same as querykth() but searches for the last occurrence of name.
Definition AMReX_ParmParse.cpp:1393
virtual void reserveData()
Definition AMReX_ParticleContainerBase.cpp:41
virtual void resizeData()
Definition AMReX_ParticleContainerBase.cpp:46
A distributed container for Particles sorted onto the levels, grids, and tiles of a block-structured ...
Definition AMReX_ParticleContainer.H:147
void addParticles(const PCType &other, bool local=false)
Add particles from other to this ParticleContainer. local controls whether or not to call Redistribut...
Definition AMReX_ParticleContainerI.H:1157
IntVect Index(const P &p, int lev) const
Definition AMReX_ParticleContainerI.H:201
void ResizeRuntimeIntComp(int new_size, bool communicate)
Definition AMReX_ParticleContainerI.H:2747
bool OK(int lev_min=0, int lev_max=-1, int nGrow=0) const
OK checks that all particles are in the right places (for some value of right)
Definition AMReX_ParticleContainerI.H:2520
std::map< std::pair< int, int >, ParticleTileType > ParticleLevel
Definition AMReX_ParticleContainer.H:188
void SetSoACompileTimeNames(std::vector< std::string > const &rdata_name, std::vector< std::string > const &idata_name)
Definition AMReX_ParticleContainerI.H:109
typename ParticleTileType::AoS AoS
Definition AMReX_ParticleContainer.H:191
typename SoA::RealVector RealVector
Definition AMReX_ParticleContainer.H:194
void locateParticle(P &p, ParticleLocData &pld, int lev_min, int lev_max, int nGrow, int local_grid=-1) const
Definition AMReX_ParticleContainerI.H:446
void SetParticleSize()
Definition AMReX_ParticleContainerI.H:16
void RemoveParticlesAtLevel(int level)
The Following methods are for managing Virtual and Ghost Particles.
Definition AMReX_ParticleContainerI.H:757
void clearParticles()
Clear all the particles in this container. This does not free memory.
Definition AMReX_ParticleContainerI.H:1130
void Increment(MultiFab &mf, int level)
Definition AMReX_ParticleContainerI.H:720
void AssignCellDensitySingleLevel(int rho_index, MultiFab &mf, int level, int ncomp=1, int particle_lvl_offset=0) const
Definition AMReX_ParticleContainerI.H:2581
bool HasIntComp(std::string const &name)
Definition AMReX_ParticleContainerI.H:148
void ShrinkToFit()
Definition AMReX_ParticleContainerI.H:700
bool HasRealComp(std::string const &name)
Definition AMReX_ParticleContainerI.H:140
void resizeData() override
This resizes the vector of dummy MultiFabs used by the ParticleContainer for the current number of le...
Definition AMReX_ParticleContainerI.H:435
void ResizeRuntimeRealComp(int new_size, bool communicate)
Definition AMReX_ParticleContainerI.H:2721
Long IncrementWithTotal(MultiFab &mf, int level, bool local=false)
Definition AMReX_ParticleContainerI.H:747
Long NumberOfParticlesAtLevel(int level, bool only_valid=true, bool only_local=false) const
Returns # of particles at specified the level.
Definition AMReX_ParticleContainerI.H:551
void SortParticlesByCell()
Sort the particles on each tile by cell, using Fortran ordering.
Definition AMReX_ParticleContainerI.H:1365
typename Particle< NStructReal, NStructInt >::RealType RealType
The type of the Real data.
Definition AMReX_ParticleContainer.H:174
int GetRealCompIndex(std::string const &name)
Definition AMReX_ParticleContainerI.H:161
void RedistributeMPI(std::map< int, Vector< char > > ¬_ours, int lev_min=0, int lev_max=0, int nGrow=0, int local=0)
Definition AMReX_ParticleContainerI.H:2167
int GetIntCompIndex(std::string const &name)
Definition AMReX_ParticleContainerI.H:183
void RemoveParticlesNotAtFinestLevel()
Definition AMReX_ParticleContainerI.H:771
Vector< Long > NumberOfParticlesInGrid(int level, bool only_valid=true, bool only_local=false) const
Definition AMReX_ParticleContainerI.H:496
typename SoA::IntVector IntVector
Definition AMReX_ParticleContainer.H:195
void copyParticles(const PCType &other, bool local=false)
Copy particles from other to this ParticleContainer. Will clear all the particles from this container...
Definition AMReX_ParticleContainerI.H:1146
ParticleLocData Reset(ParticleType &prt, bool update, bool verbose=true, ParticleLocData pld=ParticleLocData()) const
Updates a particle's location (Where), tries to periodic shift any particles that have left the domai...
Definition AMReX_ParticleContainerI.H:392
void CapacityOfParticlesInGrid(LayoutData< I > &mem, int lev) const
Return capacity of memory for particles at specific grid.
Definition AMReX_ParticleContainerI.H:593
Long TotalNumberOfParticles(bool only_valid=true, bool only_local=false) const
Returns # of particles at all levels.
Definition AMReX_ParticleContainerI.H:481
void reserveData() override
This reserves data in the vector of dummy MultiFabs used by the ParticleContainer for the maximum num...
Definition AMReX_ParticleContainerI.H:426
T_ParticleType ParticleType
Definition AMReX_ParticleContainer.H:149
Definition AMReX_ParticleLocator.H:104
AssignGrid< BinIteratorFactory > getGridAssignor() const noexcept
Definition AMReX_ParticleLocator.H:183
void build(const BoxArray &ba, const Geometry &geom)
Definition AMReX_ParticleLocator.H:111
This class provides the user with a few print options.
Definition AMReX_Print.H:35
Definition AMReX_Reduce.H:249
Type value()
Definition AMReX_Reduce.H:281
Definition AMReX_Reduce.H:364
std::enable_if_t< IsFabArray< MF >::value > eval(MF const &mf, IntVect const &nghost, D &reduce_data, F &&f)
Definition AMReX_Reduce.H:433
This class is a thin wrapper around std::vector. Unlike vector, Vector::operator[] provides bound che...
Definition AMReX_Vector.H:28
Long size() const noexcept
Definition AMReX_Vector.H:53
Definition AMReX_iMultiFab.H:32
Long sum(int comp, int nghost=0, bool local=false) const
Returns the sum in component comp.
Definition AMReX_iMultiFab.cpp:454
__host__ __device__ AMREX_FORCE_INLINE void AddNoRet(T *sum, T value) noexcept
Definition AMReX_GpuAtomic.H:281
void copyAsync(HostToDevice, InIter begin, InIter end, OutIter result) noexcept
A host-to-device copy routine. Note this is just a wrapper around memcpy, so it assumes contiguous st...
Definition AMReX_GpuContainers.H:221
static constexpr HostToDevice hostToDevice
Definition AMReX_GpuContainers.H:98
void streamSynchronize() noexcept
Definition AMReX_GpuDevice.H:260
void dtoh_memcpy_async(void *p_h, const void *p_d, const std::size_t sz) noexcept
Definition AMReX_GpuDevice.H:303
bool inLaunchRegion() noexcept
Definition AMReX_GpuControl.H:92
bool notInLaunchRegion() noexcept
Definition AMReX_GpuControl.H:93
void htod_memcpy_async(void *p_d, const void *p_h, const std::size_t sz) noexcept
Definition AMReX_GpuDevice.H:289
void QueueReduction(Func f)
Definition AMReX_Lazy.cpp:7
constexpr Long GhostParticleID
Definition AMReX_Particle.H:19
constexpr Long VirtualParticleID
Definition AMReX_Particle.H:20
constexpr int get_thread_num()
Definition AMReX_OpenMP.H:37
constexpr int get_max_threads()
Definition AMReX_OpenMP.H:36
void Sum(T &v, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:204
MPI_Comm CommunicatorSub() noexcept
sub-communicator for current frame
Definition AMReX_ParallelContext.H:70
int MyProcSub() noexcept
my sub-rank in current frame
Definition AMReX_ParallelContext.H:76
int global_to_local_rank(int rank) noexcept
Definition AMReX_ParallelContext.H:98
int NProcsSub() noexcept
number of ranks in current frame
Definition AMReX_ParallelContext.H:74
int IOProcessorNumberSub() noexcept
IO sub-rank in current frame.
Definition AMReX_ParallelContext.H:78
bool UseGpuAwareMpi()
Definition AMReX_ParallelDescriptor.H:111
void Waitall(Vector< MPI_Request > &, Vector< MPI_Status > &)
Definition AMReX_ParallelDescriptor.cpp:1304
Message Send(const T *buf, size_t n, int dst_pid, int tag)
Definition AMReX_ParallelDescriptor.H:1109
void Bcast(void *, int, MPI_Datatype, int, MPI_Comm)
Definition AMReX_ParallelDescriptor.cpp:1291
int SeqNum() noexcept
Returns sequential message sequence numbers, usually used as tags for send/recv.
Definition AMReX_ParallelDescriptor.H:613
void GatherLayoutDataToVector(const LayoutData< T > &sendbuf, Vector< T > &recvbuf, int root)
Gather LayoutData values to a vector on root.
Definition AMReX_ParallelDescriptor.H:1211
Message Arecv(T *, size_t n, int pid, int tag)
Definition AMReX_ParallelDescriptor.H:1130
void Min(KeyValuePair< K, V > &vi, int root, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:263
void Max(KeyValuePair< K, V > &vi, int root, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:232
void Sum(T &v, int root, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:320
T ExclusiveSum(N n, T const *in, T *out, RetSum a_ret_sum=retSum)
Definition AMReX_Scan.H:1267
static constexpr RetSum retSum
Definition AMReX_Scan.H:32
void clearEmptyEntries(C &c)
Definition AMReX_ParticleUtil.H:750
Definition AMReX_Amr.cpp:49
__host__ __device__ void ignore_unused(const Ts &...)
This shuts up the compiler about unused variables.
Definition AMReX.H:138
int nComp(FabArrayBase const &fa)
Definition AMReX_FabArrayBase.cpp:2852
__host__ __device__ int getTileIndex(const IntVect &iv, const Box &box, const bool a_do_tiling, const IntVect &a_tile_size, Box &tbx)
Definition AMReX_ParticleUtil.H:184
void communicateParticlesStart(const PC &pc, ParticleCopyPlan &plan, const SndBuffer &snd_buffer, RcvBuffer &rcv_buffer)
Definition AMReX_ParticleCommunication.H:500
std::enable_if_t< std::is_integral_v< T > > ParallelFor(TypeList< CTOs... > ctos, std::array< int, sizeof...(CTOs)> const &runtime_options, T N, F &&f)
Definition AMReX_CTOParallelForImpl.H:191
__host__ __device__ void copyParticle(const ParticleTileData< T_ParticleType, NAR, NAI > &dst, const ConstParticleTileData< T_ParticleType, NAR, NAI > &src, int src_i, int dst_i) noexcept
A general single particle copying routine that can run on the GPU.
Definition AMReX_ParticleTransformation.H:31
void unpackRemotes(PC &pc, const ParticleCopyPlan &plan, Buffer &rcv_buffer, UnpackPolicy const &policy)
Definition AMReX_ParticleCommunication.H:600
void copyParticles(DstTile &dst, const SrcTile &src) noexcept
Copy particles from src to dst. This version copies all the particles, writing them to the beginning ...
Definition AMReX_ParticleTransformation.H:161
Long doHandShake(const std::map< int, Vector< char > > ¬_ours, Vector< Long > &Snds, Vector< Long > &Rcvs)
Definition AMReX_ParticleMPIUtil.cpp:25
Index filterAndTransformParticles(DstTile &dst, const SrcTile &src, Index *mask, F const &f, Index src_start, Index dst_start) noexcept
Conditionally copy particles from src to dst based on the value of mask. A transformation will also b...
Definition AMReX_ParticleTransformation.H:456
bool initialized
Definition AMReX_DistributionMapping.cpp:32
__host__ __device__ bool enforcePeriodic(P &p, amrex::GpuArray< amrex::Real, 3 > const &plo, amrex::GpuArray< amrex::Real, 3 > const &phi, amrex::GpuArray< amrex::ParticleReal, 3 > const &rlo, amrex::GpuArray< amrex::ParticleReal, 3 > const &rhi, amrex::GpuArray< int, 3 > const &is_per) noexcept
Definition AMReX_ParticleUtil.H:421
Long doHandShakeLocal(const std::map< int, Vector< char > > ¬_ours, const Vector< int > &neighbor_procs, Vector< Long > &Snds, Vector< Long > &Rcvs)
Definition AMReX_ParticleMPIUtil.cpp:50
__host__ __device__ int numTilesInBox(const Box &box, const bool a_do_tiling, const IntVect &a_tile_size)
Definition AMReX_ParticleUtil.H:232
BoxND< 3 > Box
Definition AMReX_BaseFwd.H:27
__host__ __device__ Dim3 begin(BoxND< dim > const &box) noexcept
Definition AMReX_Box.H:1899
double second() noexcept
Definition AMReX_Utility.cpp:940
void communicateParticlesFinish(const ParticleCopyPlan &plan)
Definition AMReX_ParticleCommunication.cpp:384
Arena * The_Comms_Arena()
Definition AMReX_Arena.cpp:765
Index filterParticles(DstTile &dst, const SrcTile &src, const Index *mask) noexcept
Conditionally copy particles from src to dst based on the value of mask.
Definition AMReX_ParticleTransformation.H:330
IntVectND< 3 > IntVect
Definition AMReX_BaseFwd.H:30
void ParticleToMesh(PC const &pc, const Vector< MultiFab * > &mf, int lev_min, int lev_max, F &&f, bool zero_out_input=true, bool vol_weight=true)
Definition AMReX_AmrParticles.H:156
void Error(const std::string &msg)
Print out message to cerr and exit via amrex::Abort().
Definition AMReX.cpp:224
__host__ __device__ void amrex_deposit_cic(P const &p, int nc, amrex::Array4< amrex::Real > const &rho, amrex::GpuArray< amrex::Real, 3 > const &plo, amrex::GpuArray< amrex::Real, 3 > const &dxi)
Definition AMReX_Particle_mod_K.H:13
void gatherParticles(PTile &dst, const PTile &src, N np, const Index *inds)
Gather particles copies particles into contiguous order from an arbitrary order. Specifically,...
Definition AMReX_ParticleTransformation.H:674
__host__ __device__ BoxND< dim > grow(const BoxND< dim > &b, int i) noexcept
Grow BoxND in all directions by given amount.
Definition AMReX_Box.H:1229
int numParticlesOutOfRange(Iterator const &pti, int nGrow)
Returns the number of particles that are more than nGrow cells from the box correspond to the input i...
Definition AMReX_ParticleUtil.H:34
int Verbose() noexcept
Definition AMReX.cpp:169
int partitionParticlesByDest(PTile &ptile, const PLocator &ploc, CellAssignor const &assignor, const ParticleBufferMap &pmap, const GpuArray< Real, 3 > &plo, const GpuArray< Real, 3 > &phi, const GpuArray< ParticleReal, 3 > &rlo, const GpuArray< ParticleReal, 3 > &rhi, const GpuArray< int, 3 > &is_per, int lev, int gid, int, int lev_min, int lev_max, int nGrow, bool remove_negative)
Definition AMReX_ParticleUtil.H:654
void Abort(const std::string &msg)
Print out message to cerr and exit via abort().
Definition AMReX.cpp:230
__host__ __device__ void amrex_deposit_particle_dx_cic(P const &p, int nc, amrex::Array4< amrex::Real > const &rho, amrex::GpuArray< amrex::Real, 3 > const &plo, amrex::GpuArray< amrex::Real, 3 > const &dxi, amrex::GpuArray< amrex::Real, 3 > const &pdxi)
Definition AMReX_Particle_mod_K.H:118
int verbose
Definition AMReX_DistributionMapping.cpp:36
void transformParticles(DstTile &dst, const SrcTile &src, F &&f) noexcept
Apply the function f to all the particles in src, writing the result to dst. This version does all th...
Definition AMReX_ParticleTransformation.H:213
__host__ __device__ Dim3 end(BoxND< dim > const &box) noexcept
Definition AMReX_Box.H:1908
void unpackBuffer(PC &pc, const ParticleCopyPlan &plan, const Buffer &snd_buffer, UnpackPolicy const &policy)
Definition AMReX_ParticleCommunication.H:435
void packBuffer(const PC &pc, const ParticleCopyOp &op, const ParticleCopyPlan &plan, Buffer &snd_buffer)
Definition AMReX_ParticleCommunication.H:336
__host__ __device__ IntVect getParticleCell(P const &p, amrex::GpuArray< amrex::Real, 3 > const &plo, amrex::GpuArray< amrex::Real, 3 > const &dxi) noexcept
Returns the cell index for a given particle using the provided lower bounds and cell sizes.
Definition AMReX_ParticleUtil.H:336
Definition AMReX_ParticleLocator.H:216
Definition AMReX_Array4.H:61
Definition AMReX_ParticleContainerI.H:1040
amrex::AmrAssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > m_assign_grid
Definition AMReX_ParticleContainerI.H:1043
int m_lev_max
Definition AMReX_ParticleContainerI.H:1042
AssignGridFilter(amrex::AmrAssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > assign_grid, int gid, int level, int nGrow)
This filters based on matching grids.
Definition AMReX_ParticleContainerI.H:1049
int m_nGrow
Definition AMReX_ParticleContainerI.H:1042
int m_lev_min
Definition AMReX_ParticleContainerI.H:1042
AMREX_GPU_HOST_DEVICE int operator()(const SrcData &src, int src_i) const noexcept
Definition AMReX_ParticleContainerI.H:1055
int m_gid
Definition AMReX_ParticleContainerI.H:1042
Definition AMReX_ParticleLocator.H:14
Definition AMReX_ParticleTile.H:513
Definition AMReX_ParticleUtil.H:394
Definition AMReX_DenseBins.H:32
Definition AMReX_ParticleContainerI.H:799
Box m_domain
Definition AMReX_ParticleContainerI.H:803
GpuArray< Real, 3 > m_dxi
Definition AMReX_ParticleContainerI.H:802
FilterVirt(const amrex::AssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > &assign_buffer_grid, const GpuArray< Real, 3 > &plo, const GpuArray< Real, 3 > &dxi, const Box &domain)
Definition AMReX_ParticleContainerI.H:805
AMREX_GPU_HOST_DEVICE int operator()(const SrcData &src, int src_i) const noexcept
Definition AMReX_ParticleContainerI.H:812
amrex::AssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > m_assign_buffer_grid
Definition AMReX_ParticleContainerI.H:801
GpuArray< Real, 3 > m_plo
Definition AMReX_ParticleContainerI.H:802
Definition AMReX_ParticleUtil.H:303
Definition AMReX_Array.H:34
Definition AMReX_GpuControl.H:184
uint64_t m_idcpu
Definition AMReX_Particle.H:359
Definition AMReX_ParticleCommunication.H:58
void setNumLevels(int num_levels)
Definition AMReX_ParticleCommunication.cpp:14
Vector< std::map< int, Gpu::DeviceVector< IntVect > > > m_periodic_shift
Definition AMReX_ParticleCommunication.H:62
Vector< std::map< int, Gpu::DeviceVector< int > > > m_boxes
Definition AMReX_ParticleCommunication.H:59
Vector< std::map< int, Gpu::DeviceVector< int > > > m_levels
Definition AMReX_ParticleCommunication.H:60
Vector< std::map< int, Gpu::DeviceVector< int > > > m_src_indices
Definition AMReX_ParticleCommunication.H:61
void resize(int gid, int lev, int size)
Definition AMReX_ParticleCommunication.cpp:22
Definition AMReX_ParticleCommunication.H:81
void buildMPIFinish(const ParticleBufferMap &map)
Definition AMReX_ParticleCommunication.cpp:213
void build(const PC &pc, const ParticleCopyOp &op, const Vector< int > &int_comp_mask, const Vector< int > &real_comp_mask, bool local)
Definition AMReX_ParticleCommunication.H:131
A struct used for storing a particle's position in the AMR hierarchy.
Definition AMReX_ParticleContainer.H:92
Box m_grown_gridbox
Definition AMReX_ParticleContainer.H:99
IntVect m_cell
Definition AMReX_ParticleContainer.H:96
int m_grid
Definition AMReX_ParticleContainer.H:94
int m_tile
Definition AMReX_ParticleContainer.H:95
int m_lev
Definition AMReX_ParticleContainer.H:93
Box m_tilebox
Definition AMReX_ParticleContainer.H:98
Box m_gridbox
Definition AMReX_ParticleContainer.H:97
Definition AMReX_ParticleTile.H:720
std::size_t size() const
Returns the total number of particles (real and neighbor)
Definition AMReX_ParticleTile.H:889
ParticleTileDataType getParticleTileData()
Definition AMReX_ParticleTile.H:1202
int numParticles() const
Returns the number of real particles (excluding neighbors)
Definition AMReX_ParticleTile.H:902
void resize(std::size_t count, GrowthStrategy strategy=GrowthStrategy::Poisson)
Definition AMReX_ParticleTile.H:968
AoS & GetArrayOfStructs()
Definition AMReX_ParticleTile.H:877
bool empty() const
Definition AMReX_ParticleTile.H:883
The struct used to store particles.
Definition AMReX_Particle.H:402
__host__ __device__ RealVect pos() const &
Definition AMReX_Particle.H:452