13template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
14 template<
class>
class Allocator,
class CellAssignor>
18 num_real_comm_comps = 0;
19 int comm_comps_start = 0;
20 if constexpr (!ParticleType::is_soa_particle) {
21 comm_comps_start += AMREX_SPACEDIM + NStructReal;
23 for (
int i = comm_comps_start; i < comm_comps_start + NumRealComps(); ++i) {
24 if (h_redistribute_real_comp[i]) {++num_real_comm_comps;}
27 num_int_comm_comps = 0;
28 comm_comps_start = 2 + NStructInt;
29 for (
int i = comm_comps_start; i < comm_comps_start + NumIntComps(); ++i) {
30 if (h_redistribute_int_comp[i]) {++num_int_comm_comps;}
33 if constexpr (ParticleType::is_soa_particle) {
34 particle_size =
sizeof(uint64_t);
38 superparticle_size = particle_size +
39 num_real_comm_comps*
sizeof(
ParticleReal) + num_int_comm_comps*
sizeof(
int);
42template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
43 template<
class>
class Allocator,
class CellAssignor>
47 levelDirectoriesCreated =
false;
52 if constexpr (ParticleType::is_soa_particle)
54 h_redistribute_real_comp.resize(NArrayReal,
true);
56 h_redistribute_real_comp.resize(AMREX_SPACEDIM + NStructReal + NArrayReal,
true);
58 h_redistribute_int_comp.resize(2 + NStructInt + NArrayInt,
true);
63 m_soa_rdata_names.clear();
64 for (
int i=0; i<NArrayReal; ++i)
66 m_soa_rdata_names.push_back(getDefaultCompNameReal<ParticleType>(i));
68 m_soa_idata_names.clear();
69 for (
int i=0; i<NArrayInt; ++i)
71 m_soa_idata_names.push_back(getDefaultCompNameInt<ParticleType>(i));
74 static bool initialized =
false;
77 static_assert(
sizeof(ParticleType)%
sizeof(RealType) == 0,
78 "sizeof ParticleType is not a multiple of sizeof RealType");
80 ParmParse
pp(
"particles");
82 Vector<int> tilesize(AMREX_SPACEDIM);
83 if (
pp.
queryarr(
"tile_size", tilesize, 0, AMREX_SPACEDIM)) {
84 for (
int i=0; i<AMREX_SPACEDIM; ++i) { tile_size[i] = tilesize[i]; }
87 static_assert(std::is_standard_layout_v<ParticleType>,
88 "Particle type must be standard layout");
92 pp.
query(
"use_prepost", usePrePost);
93 pp.
query(
"do_unlink", doUnlink);
94 pp.
queryAdd(
"do_mem_efficient_sort", memEfficientSort);
95 pp.
queryAdd(
"use_comms_arena", use_comms_arena);
102 typename ParticleType,
105 template<
class>
class Allocator,
110 std::vector<std::string>
const & rdata_name, std::vector<std::string>
const & idata_name
117 std::set<std::string>
const unique_r_names(rdata_name.begin(), rdata_name.end());
118 std::set<std::string>
const unique_i_names(idata_name.begin(), idata_name.end());
122 for (
int i=0; i<NArrayReal; ++i)
124 m_soa_rdata_names.at(i) = rdata_name.at(i);
126 for (
int i=0; i<NArrayInt; ++i)
128 m_soa_idata_names.at(i) = idata_name.at(i);
133 typename ParticleType,
136 template<
class>
class Allocator,
142 return std::find(m_soa_rdata_names.begin(), m_soa_rdata_names.end(), name) != std::end(m_soa_rdata_names);
145template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
146 template<
class>
class Allocator,
class CellAssignor>
150 return std::find(m_soa_idata_names.begin(), m_soa_idata_names.end(), name) != std::end(m_soa_idata_names);
154 typename ParticleType,
157 template<
class>
class Allocator,
163 const auto it = std::find(m_soa_rdata_names.begin(), m_soa_rdata_names.end(), name);
165 if (it == m_soa_rdata_names.end())
167 throw std::runtime_error(
"GetRealCompIndex: Component " + name +
" does not exist!");
171 return std::distance(m_soa_rdata_names.begin(), it);
176 typename ParticleType,
179 template<
class>
class Allocator,
185 const auto it = std::find(m_soa_idata_names.begin(), m_soa_idata_names.end(), name);
187 if (it == m_soa_idata_names.end())
189 throw std::runtime_error(
"GetIntCompIndex: Component " + name +
" does not exist!");
193 return std::distance(m_soa_idata_names.begin(), it);
197template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
198 template<
class>
class Allocator,
class CellAssignor>
199template <
typename P,
typename Assignor>
204 const auto& domain = geom.
Domain();
208 return Assignor{}(p, plo, dxi, domain);
211template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
212 template<
class>
class Allocator,
class CellAssignor>
221 int local_grid)
const
227 lev_max = finestLevel();
232 AMREX_ASSERT(nGrow == 0 || (nGrow >= 0 && lev_min == lev_max));
234 std::vector< std::pair<int, Box> > isects;
236 for (
int lev = lev_max; lev >= lev_min; lev--) {
237 const IntVect& iv = Index(p, lev);
238 if (lev == pld.
m_lev) {
252 const BoxArray& ba = ParticleBoxArray(lev);
255 if (local_grid < 0) {
256 bool findfirst = (nGrow == 0) ?
true :
false;
258 grid = isects.empty() ? -1 : isects[0].first;
259 if (nGrow > 0 && isects.size() > 1) {
260 for (
auto & isect : isects) {
262 for (
int dir = 0; dir < AMREX_SPACEDIM; ++dir) {
274 grid = (*redistribute_mask_ptr)[local_grid](iv, 0);
292template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
293 template<
class>
class Allocator,
class CellAssignor>
301 int local_grid)
const
306 if (!Geom(0).isAnyPeriodic()) {
return false; }
309 lev_max = finestLevel();
317 p_prime.
pos(1) = p.pos(1);,
318 p_prime.
pos(2) = p.pos(2));
319 if (PeriodicShift(p_prime)) {
320 std::vector< std::pair<int,Box> > isects;
321 for (
int lev = lev_max; lev >= lev_min; lev--) {
325 const BoxArray& ba = ParticleBoxArray(lev);
328 if (local_grid < 0) {
331 grid = isects.empty() ? -1 : isects[0].first;
334 if (ba[local_grid].contains(iv))
341 grid = isects.empty() ? -1 : isects[0].first;
344 grid = (*redistribute_mask_ptr)[local_grid](Index(p, lev), 0);
351 p.pos(1) = p_prime.
pos(1);,
352 p.pos(2) = p_prime.
pos(2););
371template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
372 template<
class>
class Allocator,
class CellAssignor>
378 const auto& geom = Geom(0);
379 const auto plo = geom.ProbLoArray();
380 const auto phi = geom.ProbHiArray();
381 const auto rlo = geom.ProbLoArrayInParticleReal();
382 const auto rhi = geom.ProbHiArrayInParticleReal();
383 const auto is_per = geom.isPeriodicArray();
388template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
389 template<
class>
class Allocator,
class CellAssignor>
399 bool ok = Where(p, pld);
401 if (!ok && Geom(0).isAnyPeriodic())
412 amrex::AllPrint()<<
"Invalidating out-of-domain particle: " << p <<
'\n';
417 p.id().make_invalid();
423template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
424 template<
class>
class Allocator,
class CellAssignor>
429 m_particles.reserve(maxLevel()+1);
432template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
433 template<
class>
class Allocator,
class CellAssignor>
438 int nlevs = std::max(0, finestLevel()+1);
439 m_particles.resize(nlevs);
442template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
443 template<
class>
class Allocator,
class CellAssignor>
447 int lev_min,
int lev_max,
int nGrow,
int local_grid)
const
450 if (Geom(0).outsideRoundoffDomain(
AMREX_D_DECL(p.pos(0), p.pos(1), p.pos(2))))
453 success = EnforcePeriodicWhere(p, pld, lev_min, lev_max, local_grid);
454 if (!success && lev_min == 0)
457 p.id().make_invalid();
463 success = Where(p, pld, lev_min, lev_max, 0, local_grid);
468 success = (nGrow > 0) && Where(p, pld, lev_min, lev_min, nGrow);
474 amrex::Abort(
"ParticleContainer::locateParticle(): invalid particle.");
478template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
479 template<
class>
class Allocator,
class CellAssignor>
484 for (
int lev = 0; lev <= finestLevel(); lev++) {
485 nparticles += NumberOfParticlesAtLevel(lev,only_valid,
true);
493template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
494 template<
class>
class Allocator,
class CellAssignor>
498 AMREX_ASSERT(lev >= 0 && lev <
int(m_particles.size()));
501 ParticleDistributionMap(lev));
505 int gid = pti.index();
508 const auto& ptile = ParticlesAt(lev, pti);
509 const int np = ptile.numParticles();
510 auto const ptd = ptile.getConstParticleTileData();
514 using ReduceTuple =
typename decltype(reduce_data)::Type;
516 reduce_op.
eval(np, reduce_data,
519 return (ptd.id(i).is_valid()) ? 1 : 0;
522 int np_valid = amrex::get<0>(reduce_data.value(reduce_op));
523 np_per_grid_local[gid] += np_valid;
526 np_per_grid_local[gid] += pti.numParticles();
535 nparticles[pti.index()] = np_per_grid_local[pti.index()];
549template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
555 if (level < 0 || level >=
int(m_particles.size())) {
return nparticles; }
560 using ReduceTuple =
typename decltype(reduce_data)::Type;
562 for (
const auto& kv : GetParticles(level)) {
563 const auto& ptile = kv.second;
564 auto const ptd = ptile.getConstParticleTileData();
566 reduce_op.
eval(ptile.numParticles(), reduce_data,
569 return (ptd.id(i).is_valid()) ? 1 : 0;
573 nparticles =
static_cast<Long>(amrex::get<0>(reduce_data.value(reduce_op)));
576 for (
const auto& kv : GetParticles(level)) {
577 const auto& ptile = kv.second;
578 nparticles += ptile.numParticles();
589template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
591template <
typename I, std::enable_if_t<std::is_
integral_v<I> && (sizeof(I) >= sizeof(Long)),
int> FOO>
595 AMREX_ASSERT(lev >= 0 && lev <
int(m_particles.size()));
601 for (ParConstIterType pti(*
this, lev); pti.isValid(); ++pti)
603 int gid = pti.index();
604 mem[gid] +=
static_cast<I
>(pti.capacity());
612template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
613 template<
class>
class Allocator,
class CellAssignor>
620 for (
unsigned lev = 0; lev < m_particles.size(); lev++) {
621 const auto& pmap = m_particles[lev];
622 for (
const auto& kv : pmap) {
623 const auto& ptile = kv.second;
624 cnt += ptile.numParticles();
628 Long mn = cnt, mx = mn;
640 amrex::Print() <<
"ParticleContainer spread across MPI nodes - bytes (num particles): [Min: "
648 <<
" (" << cnt <<
")]\n";
653 return {mn*sz, mx*sz, cnt*sz};
656template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
664 for (
unsigned lev = 0; lev < m_particles.size(); lev++) {
665 const auto& pmap = m_particles[lev];
666 for (
const auto& kv : pmap) {
667 const auto& ptile = kv.second;
668 cnt += ptile.capacity();
672 Long mn = cnt, mx = mn;
683 amrex::Print() <<
"ParticleContainer spread across MPI nodes - bytes: [Min: "
694 return {mn, mx, cnt};
697template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
698 template<
class>
class Allocator,
class CellAssignor>
702 for (
unsigned lev = 0; lev < m_particles.size(); lev++) {
703 auto& pmap = m_particles[lev];
704 for (
auto& kv : pmap) {
705 auto& ptile = kv.second;
706 ptile.shrink_to_fit();
717template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
718 template<
class>
class Allocator,
class CellAssignor>
725 if (m_particles.empty()) {
return; }
726 AMREX_ASSERT(lev >= 0 && lev <
int(m_particles.size()));
729 const auto& geom = Geom(lev);
730 const auto plo = geom.ProbLoArray();
731 const auto dxi = geom.InvCellSizeArray();
732 const auto domain = geom.Domain();
734 [=]
AMREX_GPU_DEVICE (
const typename ParticleTileType::ConstParticleTileDataType& ptd,
int ip,
737 const auto p = ptd[ip];
738 CellAssignor assignor;
739 IntVect iv = assignor(p, plo, dxi, domain);
744template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
745 template<
class>
class Allocator,
class CellAssignor>
749 BL_PROFILE(
"ParticleContainer::IncrementWithTotal(lev)");
751 return TotalNumberOfParticles(
true, local);
754template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
755 template<
class>
class Allocator,
class CellAssignor>
759 BL_PROFILE(
"ParticleContainer::RemoveParticlesAtLevel()");
760 if (level >=
int(this->m_particles.size())) {
return; }
762 if (!this->m_particles[level].empty())
768template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
769 template<
class>
class Allocator,
class CellAssignor>
773 BL_PROFILE(
"ParticleContainer::RemoveParticlesNotAtFinestLevel()");
774 AMREX_ASSERT(this->finestLevel()+1 ==
int(this->m_particles.size()));
778 for (
unsigned lev = 0; lev < m_particles.size() - 1; ++lev) {
779 auto& pmap = m_particles[lev];
781 for (
auto& kv : pmap) {
782 const auto& pbx = kv.second;
783 cnt += pbx.numParticles();
792 if (this->m_verbose > 1 && cnt > 0) {
794 <<
" particles not in finest level\n";
810 template <
typename SrcData>
812 int operator() (
const SrcData& src,
int src_i)
const noexcept
821 template <
typename DstData,
typename SrcData>
824 int src_i,
int dst_i)
const noexcept
834template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
835 template<
class>
class Allocator,
class CellAssignor>
837ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
838::CreateVirtualParticles (
int level,
AoS& virts)
const
841 CreateVirtualParticles(level, ptile);
842 ptile.GetArrayOfStructs().swap(virts);
845template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
846 template<
class>
class Allocator,
class CellAssignor>
851 BL_PROFILE(
"ParticleContainer::CreateVirtualParticles()");
855 if (level >=
static_cast<int>(m_particles.size())) {
859 std::string
const& aggregation_type = AggregationType();
860 int aggregation_buffer = AggregationBuffer();
862 if (aggregation_type ==
"None")
864 auto virts_offset = virts.numParticles();
867 const auto& src_tile = ParticlesAt(level, pti);
869 auto np = src_tile.numParticles();
870 virts.resize(virts_offset+np);
875 if (aggregation_type ==
"Cell")
878 int nComp = AMREX_SPACEDIM + NStructReal + NArrayReal;
881 MultiFab mf(ParticleBoxArray(level), ParticleDistributionMap(level),
nComp, nGhost);
883 nComp = 1 + NStructInt + NArrayInt;
884 iMultiFab imf(ParticleBoxArray(level), ParticleDistributionMap(level),
nComp, nGhost);
886 const auto& geom = Geom(level);
887 const auto plo = geom.ProbLoArray();
888 const auto dxi = geom.InvCellSizeArray();
889 const auto domain = geom.Domain();
892 bl_buffer.
complementIn(Geom(level).Domain(), ParticleBoxArray(level));
893 BoxArray buffer(std::move(bl_buffer));
894 buffer.
grow(aggregation_buffer);
897 locator.
build(buffer, geom, do_tiling, tile_size);
907 if(assign_buffer_grid(iv).first == -1)
910 for (
int i = 0; i < NArrayReal; ++i)
915 for (
int i = 0; i < AMREX_SPACEDIM; ++i)
920 for (
int i = 1; i < NStructReal; ++i)
925 for (
int i = 0; i < 1; ++i)
941 if(assign_buffer_grid(iv).first == -1)
944 if(partData(iv,0)==0)
948 for (
int i = 0; i < NStructInt; ++i)
952 for (
int i = 0; i < NArrayInt; ++i)
961 virts.resize(imf.
sum(0));
966 const auto bx = mfi.tilebox();
967 const auto partData = mf.
array(mfi);
968 const auto imf_arr = imf.
array(mfi);
971 auto *offsets_ptr = offsets.
dataPtr();
973 auto dst = virts.getParticleTileData();
976 if(imf_arr(i,j,k,0)!=0)
978 const auto idx = last_offset + offsets_ptr[
988 p.rdata(0) =
static_cast<ParticleReal>(partData(i,j,k,AMREX_SPACEDIM));;
990 for (
int n = 0; n < AMREX_SPACEDIM; ++n)
992 p.pos(n) =
static_cast<ParticleReal>(partData(i,j,k,n) / p.rdata(0));
995 for (
int n = 1; n < NStructReal; ++n)
997 p.rdata(n) =
static_cast<ParticleReal>(partData(i,j,k,AMREX_SPACEDIM+n) / p.rdata(0));
1000 for (
int n = 0; n < NArrayReal; ++n)
1002 dst.rdata(n)[idx] =
static_cast<ParticleReal>(partData(i,j,k,AMREX_SPACEDIM+NStructReal+n));
1005 for (
int n = 0; n < NStructInt; ++n)
1007 p.idata(n) = imf_arr(i,j,k,1+n);
1010 for (
int n = 0; n < NArrayInt; ++n)
1012 dst.idata(n)[idx] = imf_arr(i,j,k,1+NStructInt+n);
1017 last_offset+=next_offset;
1022 auto virts_offset = last_offset;
1025 const auto& src_tile = ParticlesAt(level, pti);
1027 auto np = src_tile.numParticles();
1028 virts.resize(virts_offset+np);
1032 virts.resize(virts_offset);
1051 template <
typename SrcData>
1057 const auto p_boxes = amrex::get<0>(tup_min);
1058 const auto p_boxes_max = amrex::get<0>(tup_max);
1059 const auto p_levs_max = amrex::get<2>(tup_max);
1060 return p_boxes_max >=0 && p_boxes ==
m_gid && p_levs_max ==
m_lev_max;
1067 template <
typename DstData,
typename SrcData>
1070 int src_i,
int dst_i)
const noexcept
1079template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1080 template<
class>
class Allocator,
class CellAssignor>
1082ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1083::CreateGhostParticles (
int level,
int nGrow,
AoS& ghosts)
const
1086 CreateGhostParticles(level, nGrow, ptile);
1087 ptile.GetArrayOfStructs().swap(ghosts);
1090template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1091 template<
class>
class Allocator,
class CellAssignor>
1096 BL_PROFILE(
"ParticleContainer::CreateGhostParticles()");
1100 if (level >=
static_cast<int>(m_particles.size())) {
1104 if (! m_particle_locator.isValid(GetParGDB(), do_tiling, tile_size)) {
1105 m_particle_locator.build(GetParGDB(), do_tiling, tile_size);
1108 m_particle_locator.setGeometry(GetParGDB());
1110 auto ghost_offset = ghosts.numParticles();
1113 const auto& src_tile = ParticlesAt(level, pti);
1114 int gid = pti.index();
1116 auto np = src_tile.numParticles();
1117 ghosts.resize(ghost_offset+np);
1120 ghosts.resize(ghost_offset);
1124template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1125 template<
class>
class Allocator,
class CellAssignor>
1130 BL_PROFILE(
"ParticleContainer::clearParticles()");
1132 for (
int lev = 0; lev < static_cast<int>(m_particles.size()); ++lev)
1134 for (
auto& kv : m_particles[lev]) { kv.second.resize(0); }
1135 particle_detail::clearEmptyEntries(m_particles[lev]);
1139template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1140 template<
class>
class Allocator,
class CellAssignor>
1141template <class PCType, std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo>
1146 using PData =
typename ParticleTileType::ConstParticleTileDataType;
1150template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1151 template<
class>
class Allocator,
class CellAssignor>
1152template <class PCType, std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo>
1157 using PData =
typename ParticleTileType::ConstParticleTileDataType;
1161template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1162 template<
class>
class Allocator,
class CellAssignor>
1163template <
class F,
class PCType,
1164 std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo,
1165 std::enable_if_t<! std::is_integral_v<F>,
int> bar>
1170 BL_PROFILE(
"ParticleContainer::copyParticles");
1172 addParticles(other, std::forward<F>(f), local);
1175template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1176 template<
class>
class Allocator,
class CellAssignor>
1177template <
class F,
class PCType,
1178 std::enable_if_t<IsParticleContainer<PCType>::value,
int> foo,
1179 std::enable_if_t<! std::is_integral_v<F>,
int> bar>
1184 BL_PROFILE(
"ParticleContainer::addParticles");
1187 for (
int lev = 0; lev < other.numLevels(); ++lev)
1190 const auto& plevel_other = other.GetParticles(lev);
1191 for(
MFIter mfi = other.MakeMFIter(lev); mfi.isValid(); ++mfi)
1193 auto index = std::make_pair(mfi.index(), mfi.LocalTileIndex());
1194 if(!plevel_other.contains(index)) {
continue; }
1196 DefineAndReturnParticleTile(lev, mfi.index(), mfi.LocalTileIndex());
1201#pragma omp parallel if (Gpu::notInLaunchRegion())
1203 for (
int lev = 0; lev < other.numLevels(); ++lev)
1205 const auto& plevel_other = other.GetParticles(lev);
1206 for(
MFIter mfi = other.MakeMFIter(lev); mfi.isValid(); ++mfi)
1208 auto index = std::make_pair(mfi.index(), mfi.LocalTileIndex());
1209 if(!plevel_other.contains(index)) {
continue; }
1212 auto& ptile = ParticlesAt(lev, mfi.index(), mfi.LocalTileIndex());
1213 const auto& ptile_other = plevel_other.at(index);
1214 auto np = ptile_other.numParticles();
1215 if (np == 0) {
continue; }
1217 auto dst_index = ptile.numParticles();
1218 ptile.resize(dst_index + np);
1221 static_cast<decltype(np)
>(0), dst_index, np);
1223 ptile.resize(dst_index + count);
1227 if (! local) { Redistribute(); }
1233template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1234 template<
class>
class Allocator,
class CellAssignor>
1242 !is_rtsoa_pc || NumRuntimeRealComps() >= AMREX_SPACEDIM,
1243 "ParticleContainer with RTSoA requires at least AMREX_SPACEDIM "
1244 "runtime real components for positions"
1247 Redistribute_impl(lev_min, lev_max, nGrow, local, remove_negative);
1252template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1253 template<
class>
class Allocator,
class CellAssignor>
1254template <
class index_type>
1259 auto& ptile = ParticlesAt(lev, mfi);
1260 const size_t np = ptile.numParticles();
1261 const size_t np_total = np + ptile.numNeighborParticles();
1263 if (memEfficientSort) {
1266 ParticleTileType ptile_tmp;
1267 ptile_tmp.define(m_num_runtime_real, m_num_runtime_int,
1268 &m_soa_rdata_names, &m_soa_idata_names, arena());
1269 ptile_tmp.resize(np_total);
1274 ptile.swap(ptile_tmp);
1278template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1279 template<
class>
class Allocator,
class CellAssignor>
1292 BL_PROFILE(
"ParticleContainer::SortParticlesByBin()");
1296 for (
int lev = 0; lev < numLevels(); ++lev)
1301 const auto domain = geom.
Domain();
1305 auto& ptile = ParticlesAt(lev, mfi);
1306 const size_t np = ptile.numParticles();
1312 m_bins.build(np, ptile.getParticleTileData(), ntiles,
1319template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1320 template<
class>
class Allocator,
class CellAssignor>
1325 BL_PROFILE(
"ParticleContainer::SortParticlesForDeposition()");
1327 for (
int lev = 0; lev < numLevels(); ++lev)
1333 const auto& ptile = ParticlesAt(lev, mfi);
1334 const size_t np = ptile.numParticles();
1338 using index_type =
typename decltype(m_bins)::index_type;
1340 PermutationForDeposition<index_type>(perm, np, ptile, box, geom, idx_type);
1346template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1347 template<
class>
class Allocator,
class CellAssignor>
1352 int lev,
int gid,
int tid,
1353 int lev_min,
int lev_max,
int nGrow,
int local,
1354 bool remove_negative,
int myproc,
1362 auto ptd = src_tile.getParticleTileData();
1365 Long last = src_tile.numParticles() - 1;
1368 while (pindex <= last) {
1369 decltype(
auto) p = ptd[pindex];
1372 if (!ptd.id(pindex).is_valid()) {
1373 if (remove_negative) {
1375 correctCellVectors(last, pindex, gid, p);
1386 if (lev == lev_max && pld.
m_tile == tid && pld.
m_grid == gid && pld.
m_lev == lev && who == myproc) {
1387 const auto iv = Index(p, lev);
1395 locateParticle(p, pld, lev_min, lev_max, nGrow, local ? gid : -1);
1396 particlePostLocate(p, pld, lev);
1399 if (!ptd.id(pindex).is_valid()) {
1401 correctCellVectors(last, pindex, gid, p);
1408 if (pld.
m_lev != lev || pld.
m_grid != gid || pld.
m_tile != tid || who != myproc) {
1411 correctCellVectors(last, pindex, gid, p);
1412 boxes[num_move] = pld.
m_grid;
1413 levels[num_move] = pld.
m_lev;
1414 tiles[num_move] = pld.
m_tile;
1415 src_indices[num_move] =
static_cast<int>(last);
1427 src_indices.
resize(num_move);
1428 periodic_shift.
resize(num_move);
1430 return static_cast<int>(pindex);
1436template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1437 template<
class>
class Allocator,
class CellAssignor>
1439ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1440::Redistribute_impl (
int lev_min,
int lev_max,
int nGrow,
int local,
bool remove_negative)
1444 BL_PROFILE(
"ParticleContainer::Redistribute_impl()");
1447 int theEffectiveFinestLevel = m_gdb->finestLevel();
1448 while (!m_gdb->LevelDefined(theEffectiveFinestLevel)) { theEffectiveFinestLevel--; }
1450 if (
int(m_particles.size()) < theEffectiveFinestLevel+1) {
1452 amrex::Print() <<
"ParticleContainer::Redistribute() resizing containers from "
1453 << m_particles.size() <<
" to "
1454 << theEffectiveFinestLevel + 1 <<
'\n';
1456 m_particles.resize(theEffectiveFinestLevel+1);
1457 m_dummy_mf.resize(theEffectiveFinestLevel+1);
1460 for (
int lev = 0; lev < theEffectiveFinestLevel+1; ++lev) { RedefineDummyMF(lev); }
1462 int finest_lev_particles;
1463 if (lev_max == -1) {
1464 lev_max = theEffectiveFinestLevel;
1465 finest_lev_particles = m_particles.size() - 1;
1467 finest_lev_particles = lev_max;
1471 this->defineBufferMap();
1473#ifndef AMREX_USE_GPU
1474 if (local > 0) { BuildRedistributeMask(0, local); }
1476 if (! m_particle_locator.isValid(GetParGDB(), do_tiling, tile_size)) { m_particle_locator.build(GetParGDB(), do_tiling, tile_size); }
1477 m_particle_locator.setGeometry(GetParGDB());
1482 int num_levels = finest_lev_particles + 1;
1483 op.setNumLevels(num_levels);
1484 Vector<std::map<std::pair<int, int>,
int> > new_sizes(num_levels);
1485#ifndef AMREX_USE_GPU
1489 auto assign_grid = m_particle_locator.getGridAssignor();
1490 const auto plo = Geom(0).ProbLoArray();
1491 const auto phi = Geom(0).ProbHiArray();
1492 const auto rlo = Geom(0).ProbLoArrayInParticleReal();
1493 const auto rhi = Geom(0).ProbHiArrayInParticleReal();
1494 const auto is_per = Geom(0).isPeriodicArray();
1497#if defined(AMREX_USE_OMP) || defined(AMREX_USE_GPU)
1502#ifndef AMREX_USE_GPU
1509 std::size_t num_tiles = 0;
1510 for (
int lev = lev_min; lev <= finest_lev_particles; ++lev) {
1511 for (
auto const& kv : m_particles[lev]) {
1512 if (kv.second.numParticles() != 0) {
1517 grid_tile_ids.reserve(num_tiles);
1518 ptile_ptrs.reserve(num_tiles);
1519 plevs.reserve(num_tiles);
1520 new_size_ptrs.reserve(num_tiles);
1521#ifndef AMREX_USE_GPU
1522 box_ptrs.reserve(num_tiles);
1523 level_ptrs.reserve(num_tiles);
1524 tile_ptrs.reserve(num_tiles);
1525 src_index_ptrs.reserve(num_tiles);
1526 periodic_shift_ptrs.reserve(num_tiles);
1528 for (
int lev = lev_min; lev <= finest_lev_particles; lev++) {
1529 auto& pmap = m_particles[lev];
1530 for (
auto& kv : pmap)
1532 const auto np = kv.second.numParticles();
1533 if (np == 0) {
continue; }
1535 grid_tile_ids.push_back(kv.first);
1536 ptile_ptrs.push_back(&(kv.second));
1537 plevs.push_back(lev);
1538 auto index = std::make_pair(kv.first.first, kv.first.second);
1539 auto& new_size = new_sizes[lev][index];
1541 new_size_ptrs.push_back(&new_size);
1542#ifndef AMREX_USE_GPU
1543 op.resize(kv.first.first, kv.first.second, lev,
static_cast<int>(np));
1544 auto& boxes = op.m_boxes[lev][index];
1545 auto& levels = op.m_levels[lev][index];
1546 auto& tiles = op.m_tiles[lev][index];
1547 auto& src_indices = op.m_src_indices[lev][index];
1548 auto& periodic_shift = op.m_periodic_shift[lev][index];
1549 box_ptrs.push_back(&boxes);
1550 level_ptrs.push_back(&levels);
1551 tile_ptrs.push_back(&tiles);
1552 src_index_ptrs.push_back(&src_indices);
1553 periodic_shift_ptrs.push_back(&periodic_shift);
1559#if defined(AMREX_USE_OMP) || defined(AMREX_USE_GPU)
1561#pragma omp parallel for
1563 for (
int pmap_it = 0; pmap_it < static_cast<int>(ptile_ptrs.
size()); ++pmap_it)
1565 int lev = plevs[pmap_it];
1566 int gid = grid_tile_ids[pmap_it].first;
1567 int tid = grid_tile_ids[pmap_it].second;
1568 auto& src_tile = *ptile_ptrs[pmap_it];
1569 const size_t np = src_tile.numParticles();
1570 if (np == 0) {
continue;}
1572#ifndef AMREX_USE_GPU
1573 auto& boxes = *box_ptrs[pmap_it];
1574 auto& levels = *level_ptrs[pmap_it];
1575 auto& tiles = *tile_ptrs[pmap_it];
1576 auto& src_indices = *src_index_ptrs[pmap_it];
1577 auto& periodic_shift = *periodic_shift_ptrs[pmap_it];
1578 *new_size_ptrs[pmap_it] = hostPartitionTile(src_tile,
1580 lev_min, lev_max, nGrow, local,
1581 remove_negative, myproc,
1582 boxes, levels, tiles,
1583 src_indices, periodic_shift);
1586 std::forward<CellAssignor>(CellAssignor{}),
1588 plo, phi, rlo, rhi, is_per, lev, gid, tid,
1589 lev_min, lev_max, nGrow, remove_negative);
1591 int num_move = np - num_stay;
1592 *new_size_ptrs[pmap_it] = num_stay;
1593 op.resize(gid, tid, lev, num_move);
1595 auto index = std::make_pair(gid, tid);
1596 auto* p_boxes = op.m_boxes[lev][index].dataPtr();
1597 auto* p_levs = op.m_levels[lev][index].dataPtr();
1598 auto* p_tiles = op.m_tiles[lev][index].dataPtr();
1599 auto* p_src_indices = op.m_src_indices[lev][index].dataPtr();
1600 auto* p_periodic_shift = op.m_periodic_shift[lev][index].dataPtr();
1601 auto ptd = src_tile.getParticleTileData();
1605 const auto p = ptd[i + num_stay];
1607 if (!p.id().is_valid())
1615 const auto tup = assign_grid(p, lev_min, lev_max, nGrow,
1616 std::forward<CellAssignor>(CellAssignor{}));
1617 p_boxes[i] = amrex::get<0>(tup);
1618 p_tiles[i] = amrex::get<1>(tup);
1619 p_levs[i] = amrex::get<2>(tup);
1622 p_src_indices[i] = i+num_stay;
1627 for (
int lev = lev_min; lev <= finest_lev_particles; ++lev) {
1628 auto& pmap = m_particles[lev];
1629 for (
auto& kv : pmap)
1631 auto& src_tile = kv.second;
1632 const auto np = src_tile.numParticles();
1633 if (np == 0) {
continue; }
1635 int gid = kv.first.first;
1636 int tid = kv.first.second;
1637 auto index = std::make_pair(gid, tid);
1638 auto& new_size = new_sizes[lev][index];
1641 op.resize(gid, tid, lev,
static_cast<int>(np));
1642 auto& boxes = op.m_boxes[lev][index];
1643 auto& levels = op.m_levels[lev][index];
1644 auto& tiles = op.m_tiles[lev][index];
1645 auto& src_indices = op.m_src_indices[lev][index];
1646 auto& periodic_shift = op.m_periodic_shift[lev][index];
1647 new_size = hostPartitionTile(src_tile,
1649 lev_min, lev_max, nGrow, local,
1650 remove_negative, myproc,
1651 boxes, levels, tiles,
1652 src_indices, periodic_shift);
1658 ParticleCopyPlan plan;
1660 plan.build(*
this, op, h_redistribute_int_comp,
1661 h_redistribute_real_comp, local);
1667 if (use_comms_arena) {
1675 for (
int lev = lev_min; lev <= lev_max; ++lev)
1677 auto& plev = m_particles[lev];
1678 for (
auto& kv : plev)
1680 int gid = kv.first.first;
1681 int tid = kv.first.second;
1682 auto index = std::make_pair(gid, tid);
1683 auto& tile = plev[index];
1684 tile.resize(new_sizes[lev][index]);
1688 for (
int lev = lev_min; lev <= lev_max; lev++)
1690 particle_detail::clearEmptyEntries(m_particles[lev]);
1693 if (
int(m_particles.size()) > theEffectiveFinestLevel+1) {
1694 if (m_verbose > 0) {
1695 amrex::Print() <<
"ParticleContainer::Redistribute() resizing m_particles from "
1696 << m_particles.size() <<
" to " << theEffectiveFinestLevel+1 <<
'\n';
1700 m_particles.resize(theEffectiveFinestLevel + 1);
1701 m_dummy_mf.resize(theEffectiveFinestLevel + 1);
1706 plan.buildMPIFinish(BufferMap());
1708 this->ReserveForRedistribute(plan);
1709 unpackBuffer(*
this, plan, snd_buffer, RedistributeUnpackPolicy());
1711 unpackRemotes(*
this, plan, rcv_buffer, RedistributeUnpackPolicy());
1716 Gpu::PinnedVector<char> pinned_snd_buffer;
1717 Gpu::PinnedVector<char> pinned_rcv_buffer;
1719 if (snd_buffer.arena()->isPinned()) {
1720 plan.buildMPIFinish(BufferMap());
1724 pinned_snd_buffer.resize(snd_buffer.
size());
1726 plan.buildMPIFinish(BufferMap());
1731 this->ReserveForRedistribute(plan);
1733 rcv_buffer.
resize(pinned_rcv_buffer.size());
1734 unpackBuffer(*
this, plan, snd_buffer, RedistributeUnpackPolicy());
1737 unpackRemotes(*
this, plan, rcv_buffer, RedistributeUnpackPolicy());
1744template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1745 template<
class>
class Allocator,
class CellAssignor>
1747ParticleContainer_impl<ParticleType, NArrayReal, NArrayInt, Allocator, CellAssignor>
1750 BL_PROFILE(
"ParticleContainer::ReserveForRedistribute()");
1752 std::map<ParticleTileType*, int> addsizes;
1754 for (
int lev = 0; lev < this->BufferMap().numLevels(); ++lev) {
1755 for (
MFIter mfi = this->MakeMFIter(lev); mfi.
isValid(); ++mfi) {
1756 int gid = mfi.
index();
1758 auto& tile = this->DefineAndReturnParticleTile(lev, gid, tid);
1759 int num_copies = plan.
m_box_counts_h[this->BufferMap().gridAndTileAndLevToBucket(gid, tid, lev)];
1760 if (num_copies > 0) {
1761 addsizes[&tile] += num_copies;
1772 auto& tile = this->DefineAndReturnParticleTile(lev, gid, tid);
1773 addsizes[&tile] += copy_size;
1777 ParticleTileType::reserve(addsizes);
1780template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1781 template<
class>
class Allocator,
class CellAssignor>
1787 if (lev_max == -1) {
1788 lev_max = finestLevel();
1794template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1795 template<
class>
class Allocator,
class CellAssignor>
1801 ptile.GetArrayOfStructs().swap(particles);
1802 AddParticlesAtLevel(ptile, level, nGrow);
1805template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1806 template<
class>
class Allocator,
class CellAssignor>
1811 BL_PROFILE(
"ParticleContainer::AddParticlesAtLevel()");
1813 if (
int(m_particles.size()) < level+1)
1817 amrex::Print() <<
"ParticleContainer::AddParticlesAtLevel resizing m_particles from "
1818 << m_particles.size()
1822 m_particles.resize(level+1);
1823 m_dummy_mf.resize(level+1);
1824 for (
int lev = 0; lev < level+1; ++lev) {
1825 RedefineDummyMF(lev);
1829 auto& ptile = DefineAndReturnParticleTile(level, 0, 0);
1830 int old_np = ptile.size();
1831 int num_to_add = particles.size();
1832 int new_np = old_np + num_to_add;
1833 ptile.resize(new_np);
1835 Redistribute(level, level, nGrow);
1836 particles.resize(0);
1840template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1841 template<
class>
class Allocator,
class CellAssignor>
1848 int particle_lvl_offset)
const
1850 BL_PROFILE(
"ParticleContainer::AssignCellDensitySingleLevel()");
1852 if (rho_index != 0) {
amrex::Abort(
"AssignCellDensitySingleLevel only works if rho_index = 0"); }
1856 if (OnSameGrids(lev, mf_to_be_filled)) {
1859 mf_pointer = &mf_to_be_filled;
1864 mf_pointer =
new MultiFab(ParticleBoxArray(lev),
1865 ParticleDistributionMap(lev),
1866 ncomp, mf_to_be_filled.
nGrow());
1873 if (mf_pointer->
nGrow() < 1) {
1874 amrex::Error(
"Must have at least one ghost cell when in AssignCellDensitySingleLevel");
1879 const auto dxi = Geom(lev).InvCellSizeArray();
1880 const auto plo = Geom(lev).ProbLoArray();
1881 const auto pdxi = Geom(lev + particle_lvl_offset).InvCellSizeArray();
1883 if (Geom(lev).isAnyPeriodic() && ! Geom(lev).isAllPeriodic())
1885 amrex::Error(
"AssignCellDensitySingleLevel: problem must be periodic in no or all directions");
1892#pragma omp parallel if (Gpu::notInLaunchRegion())
1897 const Long np = pti.numParticles();
1898 auto ptd = pti.GetParticleTile().getConstParticleTileData();
1900 auto rhoarr = fab.
array();
1903 if (Gpu::notInLaunchRegion())
1905 tile_box = pti.tilebox();
1907 local_rho.
resize(tile_box,ncomp);
1908 local_rho.
setVal<RunOn::Host>(0.0);
1909 rhoarr = local_rho.
array();
1913 if (particle_lvl_offset == 0)
1918 amrex_deposit_cic(p, ncomp, rhoarr, plo, dxi);
1926 amrex_deposit_particle_dx_cic(p, ncomp, rhoarr, plo, dxi, pdxi);
1931 if (Gpu::notInLaunchRegion())
1933 fab.
atomicAdd<RunOn::Host>(local_rho, tile_box, tile_box, 0, 0, ncomp);
1944 for (
int n = 1; n < ncomp; n++)
1948 (*mf_pointer)[mfi].protected_divide<RunOn::Device>((*mf_pointer)[mfi],0,n,1);
1955 const Real* dx = Geom(lev).CellSize();
1962 if (mf_pointer != &mf_to_be_filled)
1964 mf_to_be_filled.
ParallelCopy(*mf_pointer,0,0,ncomp,0,0);
1972 ParallelReduce::Max(stoptime, ParallelContext::IOProcessorNumberSub(),
1973 ParallelContext::CommunicatorSub());
1975 amrex::Print() <<
"ParticleContainer::AssignCellDensitySingleLevel) time: "
1976 << stoptime <<
'\n';
1980template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
1981 template<
class>
class Allocator,
class CellAssignor>
1986 int old_size = m_num_runtime_real;
1988 m_runtime_comps_defined = (new_size > 0);
1989 m_num_runtime_real = new_size;
1990 int cur_size = h_redistribute_real_comp.size();
1991 h_redistribute_real_comp.resize(cur_size-old_size+new_size, communicate);
1994 for (
int lev = 0; lev < numLevels(); ++lev) {
1996 auto& tile = DefineAndReturnParticleTile(lev, pti);
1997 auto np = tile.numParticles();
1998 if (np > 0 && new_size > old_size) {
1999 auto& soa = tile.GetStructOfArrays();
2006template <
typename ParticleType,
int NArrayReal,
int NArrayInt,
2007 template<
class>
class Allocator,
class CellAssignor>
2012 int old_size = m_num_runtime_int;
2014 m_runtime_comps_defined = (new_size > 0);
2015 m_num_runtime_int = new_size;
2016 int cur_size = h_redistribute_int_comp.size();
2017 h_redistribute_int_comp.resize(cur_size-old_size+new_size, communicate);
2020 for (
int lev = 0; lev < numLevels(); ++lev) {
2022 auto& tile = DefineAndReturnParticleTile(lev, pti);
2023 auto np = tile.numParticles();
2024 if (np > 0 && new_size > old_size) {
2025 auto& soa = tile.GetStructOfArrays();
#define BL_PROFILE_VAR_START(vname)
Definition AMReX_BLProfiler.H:562
#define BL_PROFILE(a)
Definition AMReX_BLProfiler.H:551
#define BL_PROFILE_VAR_STOP(vname)
Definition AMReX_BLProfiler.H:563
#define BL_PROFILE_SYNC_STOP()
Definition AMReX_BLProfiler.H:645
#define BL_PROFILE_SYNC_START_TIMED(fname)
Definition AMReX_BLProfiler.H:644
#define BL_PROFILE_VAR_NS(fname, vname)
Definition AMReX_BLProfiler.H:561
#define AMREX_ALWAYS_ASSERT_WITH_MESSAGE(EX, MSG)
Definition AMReX_BLassert.H:49
#define AMREX_ASSERT(EX)
Definition AMReX_BLassert.H:38
#define AMREX_FORCE_INLINE
Definition AMReX_Extension.H:119
#define AMREX_HOST_DEVICE_FOR_1D(...)
Definition AMReX_GpuLaunchMacrosC.nolint.H:105
#define AMREX_GPU_DEVICE
Definition AMReX_GpuQualifiers.H:18
#define AMREX_GPU_HOST_DEVICE
Definition AMReX_GpuQualifiers.H:20
amrex::ParmParse pp
Input file parser instance for the given namespace.
Definition AMReX_HypreIJIface.cpp:15
#define AMREX_D_TERM(a, b, c)
Definition AMReX_SPACE.H:172
#define AMREX_D_DECL(a, b, c)
Definition AMReX_SPACE.H:171
Print on all processors of the default communicator.
Definition AMReX_Print.H:113
BaseFab< T > & atomicAdd(const BaseFab< T > &x) noexcept
Atomic FAB addition (a[i] <- a[i] + b[i]).
Definition AMReX_BaseFab.H:2482
Array4< T const > array() const noexcept
Definition AMReX_BaseFab.H:382
void setVal(T const &x, const Box &bx, int dcomp, int ncomp) noexcept
The setVal functions set sub-regions in the BaseFab to a constant value. This most general form speci...
Definition AMReX_BaseFab.H:1400
A collection of Boxes stored in an Array.
Definition AMReX_BoxArray.H:568
IndexType ixType() const noexcept
Return index type of this BoxArray.
Definition AMReX_BoxArray.H:858
BoxArray & grow(int n)
Grow each Box in the BoxArray by the specified amount.
Definition AMReX_BoxArray.cpp:706
std::vector< std::pair< int, Box > > intersections(const Box &bx) const
Return intersections of Box and BoxArray.
Definition AMReX_BoxArray.cpp:1186
Box getCellCenteredBox(int index) const noexcept
Return cell-centered box at element index of this BoxArray.
Definition AMReX_BoxArray.H:748
static bool SameRefs(const BoxArray &lhs, const BoxArray &rhs)
whether two BoxArrays share the same data
Definition AMReX_BoxArray.H:841
A class for managing a List of Boxes that share a common IndexType. This class implements operations ...
Definition AMReX_BoxList.H:52
BoxList & complementIn(const Box &b, const BoxList &bl)
Definition AMReX_BoxList.cpp:307
__host__ __device__ BoxND & grow(int i) noexcept
Definition AMReX_Box.H:641
__host__ __device__ bool contains(const IntVectND< dim > &p) const noexcept
Return true if argument is contained within BoxND.
Definition AMReX_Box.H:212
GpuArray< Real, 3 > InvCellSizeArray() const noexcept
Definition AMReX_CoordSys.H:87
A Fortran Array of REALs.
Definition AMReX_FArrayBox.H:231
void resize(const Box &b, int N=1, Arena *ar=nullptr)
For debugging purposes we hide BaseFab version and do some extra work.
Definition AMReX_FArrayBox.cpp:178
int size() const noexcept
Return the number of FABs in the FabArray.
Definition AMReX_FabArrayBase.H:110
int nGrow(int direction=0) const noexcept
Return the grow factor that defines the region of definition.
Definition AMReX_FabArrayBase.H:78
const DistributionMapping & DistributionMap() const noexcept
Return constant reference to associated DistributionMapping.
Definition AMReX_FabArrayBase.H:131
const BoxArray & boxArray() const noexcept
Return a constant reference to the BoxArray that defines the valid region associated with this FabArr...
Definition AMReX_FabArrayBase.H:95
void ParallelCopy(const FabArray< FAB > &src, const Periodicity &period=Periodicity::NonPeriodic(), CpOp op=FabArrayBase::COPY)
Definition AMReX_FabArray.H:854
Array4< typename FabArray< FAB >::value_type const > array(const MFIter &mfi) const noexcept
Definition AMReX_FabArray.H:568
void setVal(value_type val)
Set all components in the entire region of each FAB to val.
Definition AMReX_FabArray.H:2665
Rectangular problem domain geometry.
Definition AMReX_Geometry.H:74
const Box & Domain() const noexcept
Returns our rectangular domain.
Definition AMReX_Geometry.H:211
GpuArray< Real, 3 > ProbLoArray() const noexcept
Definition AMReX_Geometry.H:187
static void streamSynchronize() noexcept
Definition AMReX_GpuDevice.cpp:855
__host__ __device__ bool cellCentered() const noexcept
True if the IndexTypeND is CELL based in all directions.
Definition AMReX_IndexType.H:104
__host__ static __device__ constexpr IntVectND< dim > TheZeroVector() noexcept
This static member function returns a reference to a constant IntVectND object, all of whose dim argu...
Definition AMReX_IntVect.H:771
a one-thingy-per-box distributed object
Definition AMReX_LayoutData.H:13
Iterator for looping ever tiles and boxes of amrex::FabArray based containers.
Definition AMReX_MFIter.H:88
int LocalTileIndex() const noexcept
The current local tile index in the current grid;.
Definition AMReX_MFIter.H:181
bool isValid() const noexcept
Is the iterator valid i.e. is it associated with a FAB?
Definition AMReX_MFIter.H:172
Box validbox() const noexcept
Return the valid Box in which the current tile resides.
Definition AMReX_MFIter.H:163
int index() const noexcept
The index into the underlying BoxArray of the current FAB.
Definition AMReX_MFIter.H:175
A collection (stored as an array) of FArrayBox objects.
Definition AMReX_MultiFab.H:40
void mult(Real val, int comp, int num_comp, int nghost=0)
Scales the value of each cell in the specified subregion of the MultiFab by the scalar val (a[i] <- a...
Definition AMReX_MultiFab.cpp:1417
Dynamically allocated vector for trivially copyable data.
Definition AMReX_PODVector.H:308
size_type size() const noexcept
Definition AMReX_PODVector.H:648
void resize(size_type a_new_size, GrowthStrategy strategy=GrowthStrategy::Poisson)
Definition AMReX_PODVector.H:728
T * dataPtr() noexcept
Definition AMReX_PODVector.H:670
Definition AMReX_ParIter.H:147
Definition AMReX_ParIter.H:118
int queryAdd(std::string_view name, T &ref)
If name is found, the value in the ParmParse database will be stored in the ref argument....
Definition AMReX_ParmParse.H:1045
int queryarr(std::string_view name, std::vector< int > &ref, int start_ix=FIRST, int num_val=ALL) const
Same as queryktharr() but searches for last occurrence of name.
Definition AMReX_ParmParse.cpp:2032
int query(std::string_view name, bool &ref, int ival=FIRST) const
Same as querykth() but searches for the last occurrence of name.
Definition AMReX_ParmParse.cpp:1946
virtual void reserveData()
Definition AMReX_ParticleContainerBase.cpp:41
virtual void resizeData()
Definition AMReX_ParticleContainerBase.cpp:46
A distributed container for Particles sorted onto the levels, grids, and tiles of a block-structured ...
Definition AMReX_ParticleContainer.H:149
void addParticles(const PCType &other, bool local=false)
Add particles from other to this ParticleContainer. local controls whether or not to call Redistribut...
Definition AMReX_ParticleContainerI.H:1155
IntVect Index(const P &p, int lev) const
Definition AMReX_ParticleContainerI.H:201
std::map< std::pair< int, int >, ParticleTileType > ParticleLevel
Definition AMReX_ParticleContainer.H:196
void SetSoACompileTimeNames(std::vector< std::string > const &rdata_name, std::vector< std::string > const &idata_name)
Definition AMReX_ParticleContainerI.H:109
typename ParticleTileType::AoS AoS
Definition AMReX_ParticleContainer.H:199
void SetParticleSize()
Definition AMReX_ParticleContainerI.H:16
void RemoveParticlesAtLevel(int level)
The Following methods are for managing Virtual and Ghost Particles.
Definition AMReX_ParticleContainerI.H:757
void clearParticles()
Clear all the particles in this container. This does not free memory.
Definition AMReX_ParticleContainerI.H:1128
void Increment(MultiFab &mf, int level)
Definition AMReX_ParticleContainerI.H:720
bool HasIntComp(std::string const &name)
Definition AMReX_ParticleContainerI.H:148
void ShrinkToFit()
Definition AMReX_ParticleContainerI.H:700
bool HasRealComp(std::string const &name)
Definition AMReX_ParticleContainerI.H:140
void resizeData() override
This resizes the vector of dummy MultiFabs used by the ParticleContainer for the current number of le...
Definition AMReX_ParticleContainerI.H:435
Long IncrementWithTotal(MultiFab &mf, int level, bool local=false)
Definition AMReX_ParticleContainerI.H:747
Long NumberOfParticlesAtLevel(int level, bool only_valid=true, bool only_local=false) const
Returns # of particles at specified the level.
Definition AMReX_ParticleContainerI.H:551
void SortParticlesByCell()
Sort the particles on each tile by cell, using Fortran ordering.
Definition AMReX_ParticleContainerI.H:1281
int GetRealCompIndex(std::string const &name)
Definition AMReX_ParticleContainerI.H:161
int GetIntCompIndex(std::string const &name)
Definition AMReX_ParticleContainerI.H:183
void RemoveParticlesNotAtFinestLevel()
Definition AMReX_ParticleContainerI.H:771
Vector< Long > NumberOfParticlesInGrid(int level, bool only_valid=true, bool only_local=false) const
Definition AMReX_ParticleContainerI.H:496
void copyParticles(const PCType &other, bool local=false)
Copy particles from other to this ParticleContainer. Will clear all the particles from this container...
Definition AMReX_ParticleContainerI.H:1144
ParticleLocData Reset(ParticleType &prt, bool update, bool verbose=true, ParticleLocData pld=ParticleLocData()) const
Updates a particle's location (Where), tries to periodic shift any particles that have left the domai...
Definition AMReX_ParticleContainerI.H:392
void CapacityOfParticlesInGrid(LayoutData< I > &mem, int lev) const
Return capacity of memory for particles at specific grid.
Definition AMReX_ParticleContainerI.H:593
std::conditional_t< is_rtsoa_pc, ParticleTileRT< typename ParticleType::RealType, typename ParticleType::IntType >, ParticleTile< ParticleType, NArrayReal, NArrayInt, Allocator > > ParticleTileType
Definition AMReX_ParticleContainer.H:191
Long TotalNumberOfParticles(bool only_valid=true, bool only_local=false) const
Returns # of particles at all levels.
Definition AMReX_ParticleContainerI.H:481
void reserveData() override
This reserves data in the vector of dummy MultiFabs used by the ParticleContainer for the maximum num...
Definition AMReX_ParticleContainerI.H:426
T_ParticleType ParticleType
Definition AMReX_ParticleContainer.H:151
Definition AMReX_ParticleLocator.H:123
void build(const BoxArray &ba, const Geometry &geom, bool a_do_tiling=false, const IntVect &a_tile_size=IntVect(1024000, 1024000, 1024000))
Definition AMReX_ParticleLocator.H:130
AssignGrid< BinIteratorFactory > getGridAssignor() const noexcept
Definition AMReX_ParticleLocator.H:206
This class provides the user with a few print options.
Definition AMReX_Print.H:35
Definition AMReX_Reduce.H:453
Definition AMReX_Reduce.H:612
std::enable_if_t< IsFabArray< MF >::value > eval(MF const &mf, IntVect const &nghost, D &reduce_data, F &&f)
Definition AMReX_Reduce.H:746
This class is a thin wrapper around std::vector. Unlike vector, Vector::operator[] provides bound che...
Definition AMReX_Vector.H:28
Long size() const noexcept
Definition AMReX_Vector.H:53
A Collection of IArrayBoxes.
Definition AMReX_iMultiFab.H:34
Long sum(int comp, int nghost=0, bool local=false) const
Returns the sum in component comp.
Definition AMReX_iMultiFab.cpp:454
amrex_real Real
Floating Point Type for Fields.
Definition AMReX_REAL.H:79
amrex_particle_real ParticleReal
Floating Point Type for Particles.
Definition AMReX_REAL.H:90
amrex_long Long
Definition AMReX_INT.H:30
T ExclusiveSum(N n, T const *in, T *out, RetSum a_ret_sum=retSum)
Exclusive sum.
Definition AMReX_Scan.H:1291
void SumBoundary(const Periodicity &period=Periodicity::NonPeriodic(), bool deterministic=false)
Sum values in overlapped cells.
Definition AMReX_FabArray.H:3596
__host__ __device__ BoxND< dim > grow(const BoxND< dim > &b, int i) noexcept
Grow BoxND in all directions by given amount.
Definition AMReX_Box.H:1280
Arena * The_Comms_Arena()
Definition AMReX_Arena.cpp:880
void Min(KeyValuePair< K, V > &vi, int root, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:287
void Max(KeyValuePair< K, V > &vi, int root, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:254
void Sum(T &v, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:221
void Sum(T &v, int root, MPI_Comm comm)
Definition AMReX_ParallelReduce.H:352
__host__ __device__ AMREX_FORCE_INLINE void AddNoRet(T *sum, T value) noexcept
Definition AMReX_GpuAtomic.H:283
void streamSynchronize() noexcept
Definition AMReX_GpuDevice.H:310
void dtoh_memcpy_async(void *p_h, const void *p_d, const std::size_t sz) noexcept
Definition AMReX_GpuDevice.H:435
void htod_memcpy_async(void *p_d, const void *p_h, const std::size_t sz) noexcept
Definition AMReX_GpuDevice.H:421
void QueueReduction(Func f)
Definition AMReX_Lazy.cpp:7
constexpr Long GhostParticleID
Definition AMReX_Particle.H:19
constexpr Long VirtualParticleID
Definition AMReX_Particle.H:20
MPI_Comm CommunicatorSub() noexcept
sub-communicator for current frame
Definition AMReX_ParallelContext.H:70
int MyProcSub() noexcept
my sub-rank in current frame
Definition AMReX_ParallelContext.H:76
int IOProcessorNumberSub() noexcept
IO sub-rank in current frame.
Definition AMReX_ParallelContext.H:78
bool UseGpuAwareMpi()
Definition AMReX_ParallelDescriptor.H:113
void Bcast(void *, int, MPI_Datatype, int, MPI_Comm)
Definition AMReX_ParallelDescriptor.cpp:1295
void GatherLayoutDataToVector(const LayoutData< T > &sendbuf, Vector< T > &recvbuf, int root)
Gather LayoutData values to a vector on root.
Definition AMReX_ParallelDescriptor.H:1295
static constexpr RetSum retSum
Definition AMReX_Scan.H:32
Definition AMReX_Amr.cpp:49
int nComp(FabArrayBase const &fa)
Definition AMReX_FabArrayBase.cpp:2851
__host__ __device__ void swapParticle(const ParticleTileData< T_ParticleType, NAR, NAI > &dst, const ParticleTileData< T_ParticleType, NAR, NAI > &src, int src_i, int dst_i) noexcept
A general single particle swapping routine that can run on the GPU.
Definition AMReX_ParticleTransformation.H:120
__host__ __device__ int getTileIndex(const IntVect &iv, const Box &box, const bool a_do_tiling, const IntVect &a_tile_size, Box &tbx)
Definition AMReX_ParticleUtil.H:185
void communicateParticlesStart(const PC &pc, ParticleCopyPlan &plan, const SndBuffer &snd_buffer, RcvBuffer &rcv_buffer)
Definition AMReX_ParticleCommunication.H:908
std::enable_if_t< std::is_integral_v< T > > ParallelFor(TypeList< CTOs... > ctos, std::array< int, sizeof...(CTOs)> const &runtime_options, T N, F &&f)
Definition AMReX_CTOParallelForImpl.H:193
__host__ __device__ void copyParticle(const ParticleTileData< T_ParticleType, NAR, NAI > &dst, const ConstParticleTileData< T_ParticleType, NAR, NAI > &src, int src_i, int dst_i) noexcept
A general single particle copying routine that can run on the GPU.
Definition AMReX_ParticleTransformation.H:32
void unpackRemotes(PC &pc, const ParticleCopyPlan &plan, Buffer &rcv_buffer, UnpackPolicy const &policy)
Definition AMReX_ParticleCommunication.H:1008
void copyParticles(DstTile &dst, const SrcTile &src) noexcept
Copy particles from src to dst. This version copies all the particles, writing them to the beginning ...
Definition AMReX_ParticleTransformation.H:222
int partitionParticlesByDest(PTile &ptile, const PLocator &ploc, CellAssignor const &assignor, const ParticleBufferMap &pmap, const GpuArray< Real, 3 > &plo, const GpuArray< Real, 3 > &phi, const GpuArray< ParticleReal, 3 > &rlo, const GpuArray< ParticleReal, 3 > &rhi, const GpuArray< int, 3 > &is_per, int lev, int gid, int tid, int lev_min, int lev_max, int nGrow, bool remove_negative)
Definition AMReX_ParticleUtil.H:648
Index filterAndTransformParticles(DstTile &dst, const SrcTile &src, Index *mask, F const &f, Index src_start, Index dst_start) noexcept
Conditionally copy particles from src to dst based on the value of mask. A transformation will also b...
Definition AMReX_ParticleTransformation.H:519
void ReorderParticles(PTile &ptile, const index_type *permutations)
Reorder particles on the tile ptile using a the permutations array.
Definition AMReX_ParticleUtil.H:947
__host__ __device__ bool enforcePeriodic(P &p, amrex::GpuArray< amrex::Real, 3 > const &plo, amrex::GpuArray< amrex::Real, 3 > const &phi, amrex::GpuArray< amrex::ParticleReal, 3 > const &rlo, amrex::GpuArray< amrex::ParticleReal, 3 > const &rhi, amrex::GpuArray< int, 3 > const &is_per) noexcept
Definition AMReX_ParticleUtil.H:417
__host__ __device__ int numTilesInBox(const Box &box, const bool a_do_tiling, const IntVect &a_tile_size)
Definition AMReX_ParticleUtil.H:233
BoxND< 3 > Box
Box is an alias for amrex::BoxND instantiated with AMREX_SPACEDIM.
Definition AMReX_BaseFwd.H:30
double second() noexcept
Definition AMReX_Utility.cpp:940
void communicateParticlesFinish(const ParticleCopyPlan &plan)
Definition AMReX_ParticleCommunication.cpp:443
Index filterParticles(DstTile &dst, const SrcTile &src, const Index *mask) noexcept
Conditionally copy particles from src to dst based on the value of mask.
Definition AMReX_ParticleTransformation.H:393
IntVectND< 3 > IntVect
IntVect is an alias for amrex::IntVectND instantiated with AMREX_SPACEDIM.
Definition AMReX_BaseFwd.H:33
void ParticleToMesh(PC const &pc, const Vector< MultiFab * > &mf, int lev_min, int lev_max, F &&f, bool zero_out_input=true, bool vol_weight=true)
Deposit particles onto a hierarchy of MultiFabs.
Definition AMReX_AmrParticles.H:188
void Error(const std::string &msg)
Print out message to cerr and exit via amrex::Abort().
Definition AMReX.cpp:234
void gatherParticles(PTile &dst, const PTile &src, N np, const Index *inds)
Gather particles copies particles into contiguous order from an arbitrary order. Specifically,...
Definition AMReX_ParticleTransformation.H:739
int numParticlesOutOfRange(Iterator const &pti, int nGrow)
Returns the number of particles that are more than nGrow cells from the box correspond to the input i...
Definition AMReX_ParticleUtil.H:35
int Verbose() noexcept
Definition AMReX.cpp:179
void Abort(const std::string &msg)
Print out message to cerr and exit via abort().
Definition AMReX.cpp:240
const int[]
Definition AMReX_BLProfiler.cpp:1664
void transformParticles(DstTile &dst, const SrcTile &src, F &&f) noexcept
Apply the function f to all the particles in src, writing the result to dst. This version does all th...
Definition AMReX_ParticleTransformation.H:274
void unpackBuffer(PC &pc, const ParticleCopyPlan &plan, const Buffer &snd_buffer, UnpackPolicy const &policy)
Definition AMReX_ParticleCommunication.H:781
void packBuffer(const PC &pc, const ParticleCopyOp &op, const ParticleCopyPlan &plan, Buffer &snd_buffer)
Definition AMReX_ParticleCommunication.H:581
__host__ __device__ IntVect getParticleCell(P const &p, amrex::GpuArray< amrex::Real, 3 > const &plo, amrex::GpuArray< amrex::Real, 3 > const &dxi) noexcept
Returns the cell index for a given particle using the provided lower bounds and cell sizes.
Definition AMReX_ParticleUtil.H:337
Definition AMReX_ParticleLocator.H:248
A multidimensional array accessor.
Definition AMReX_Array4.H:283
Definition AMReX_ParticleContainerI.H:1038
amrex::AmrAssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > m_assign_grid
Definition AMReX_ParticleContainerI.H:1041
int m_lev_max
Definition AMReX_ParticleContainerI.H:1040
AssignGridFilter(amrex::AmrAssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > assign_grid, int gid, int level, int nGrow)
This filters based on matching grids.
Definition AMReX_ParticleContainerI.H:1047
int m_nGrow
Definition AMReX_ParticleContainerI.H:1040
int m_lev_min
Definition AMReX_ParticleContainerI.H:1040
AMREX_GPU_HOST_DEVICE int operator()(const SrcData &src, int src_i) const noexcept
Definition AMReX_ParticleContainerI.H:1053
int m_gid
Definition AMReX_ParticleContainerI.H:1040
Definition AMReX_ParticleLocator.H:17
Definition AMReX_ParticleUtil.H:390
Definition AMReX_DenseBins.H:32
Definition AMReX_ParticleContainerI.H:799
Box m_domain
Definition AMReX_ParticleContainerI.H:803
GpuArray< Real, 3 > m_dxi
Definition AMReX_ParticleContainerI.H:802
FilterVirt(const amrex::AssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > &assign_buffer_grid, const GpuArray< Real, 3 > &plo, const GpuArray< Real, 3 > &dxi, const Box &domain)
Definition AMReX_ParticleContainerI.H:805
AMREX_GPU_HOST_DEVICE int operator()(const SrcData &src, int src_i) const noexcept
Definition AMReX_ParticleContainerI.H:812
amrex::AssignGrid< amrex::DenseBinIteratorFactory< amrex::Box > > m_assign_buffer_grid
Definition AMReX_ParticleContainerI.H:801
GpuArray< Real, 3 > m_plo
Definition AMReX_ParticleContainerI.H:802
Definition AMReX_ParticleUtil.H:304
Fixed-size array that can be used on GPU.
Definition AMReX_Array.H:43
Definition AMReX_GpuControl.H:184
Definition AMReX_ParticleCommunication.H:91
Vector< int > m_rcv_box_ids
Definition AMReX_ParticleCommunication.H:365
Vector< int > m_rcv_box_counts
Definition AMReX_ParticleCommunication.H:363
Vector< int > m_rcv_box_levs
Definition AMReX_ParticleCommunication.H:368
Vector< int > m_rcv_box_tids
Definition AMReX_ParticleCommunication.H:366
int m_nrcvs
Definition AMReX_ParticleCommunication.H:371
Gpu::HostVector< unsigned int > m_box_counts_h
Definition AMReX_ParticleCommunication.H:360
A struct used for storing a particle's position in the AMR hierarchy.
Definition AMReX_ParticleContainer.H:93
Box m_grown_gridbox
Definition AMReX_ParticleContainer.H:100
IntVect m_cell
Definition AMReX_ParticleContainer.H:97
int m_grid
Definition AMReX_ParticleContainer.H:95
int m_tile
Definition AMReX_ParticleContainer.H:96
int m_lev
Definition AMReX_ParticleContainer.H:94
Box m_tilebox
Definition AMReX_ParticleContainer.H:99
Box m_gridbox
Definition AMReX_ParticleContainer.H:98
The struct used to store particles.
Definition AMReX_Particle.H:405
__host__ __device__ RealVect pos() const &
Definition AMReX_Particle.H:456