1#ifndef AMREX_PARTICLECOMMUNICATION_H_
2#define AMREX_PARTICLECOMMUNICATION_H_
3#include <AMReX_Config.H>
20 template <
class PTile>
21 void resizeTiles (std::vector<PTile*>& tiles,
const std::vector<int>& sizes, std::vector<int>& offsets)
const
23 for(
int i = 0; i < static_cast<int>(sizes.size()); ++i)
25 int offset = tiles[i]->numTotalParticles();
26 int nn = tiles[i]->getNumNeighbors();
27 tiles[i]->setNumNeighbors(nn + sizes[i]);
35 template <
class PTile>
36 void resizeTiles (std::vector<PTile*>& tiles,
const std::vector<int>& sizes, std::vector<int>& offsets)
const
38 int N =
static_cast<int>(sizes.size());
40 std::map<PTile*, int> tile_sizes;
41 for(
int i = 0; i < N; ++i) {
42 tile_sizes[tiles[i]] = tiles[i]->numParticles();
45 for(
int i = 0; i < N; ++i)
47 offsets.push_back(tile_sizes[tiles[i]]);
48 tile_sizes[tiles[i]] += sizes[i];
51 for (
auto& kv : tile_sizes) {
52 kv.first->resize(kv.second);
68 void resize (
int gid,
int lev,
int size);
70 [[nodiscard]]
int numCopies (
int gid,
int lev)
const
72 if (
m_boxes.size() <= lev) {
return 0; }
73 auto mit =
m_boxes[lev].find(gid);
74 return mit ==
m_boxes[lev].end() ? 0 :
int(mit->second.size());
130 template <class PC, std::enable_if_t<IsParticleContainer<PC>::value,
int> foo = 0>
144 const int num_buckets = pc.BufferMap().numBuckets();
160 auto getBucket = pc.stableRedistribute() ? pc.BufferMap().getHostBucketFunctor() : pc.BufferMap().getBucketFunctor();
163 if (pc.stableRedistribute() ) {
168 for (
int lev = 0; lev < num_levels; ++lev)
170 for (
const auto& kv : pc.GetParticles(lev))
172 int gid = kv.first.first;
174 if (num_copies == 0) {
continue; }
177 if (pc.stableRedistribute()) {
187 for (
int i = 0; i < num_copies; ++i) {
188 int dst_box = h_boxes[i];
190 int dst_lev = h_levs[i];
191 int index =
static_cast<int>(h_box_counts[getBucket(dst_lev, dst_box)]++);
192 h_dst_indices[i] = index;
198 const auto* p_boxes = op.
m_boxes[lev].at(gid).dataPtr();
199 const auto* p_levs = op.
m_levels[lev].at(gid).dataPtr();
203 int dst_box = p_boxes[i];
206 int dst_lev = p_levs[i];
208 &p_dst_box_counts[getBucket(dst_lev, dst_box)], 1U));
209 p_dst_indices[i] = index;
216 if (pc.stableRedistribute()) {
243 int NStructReal = PC::ParticleContainerType::NStructReal;
244 int NStructInt = PC::ParticleContainerType::NStructInt;
246 int num_real_comm_comp = 0;
247 int comm_comps_start = 0;
248 if constexpr (!PC::ParticleType::is_soa_particle) {
249 comm_comps_start += AMREX_SPACEDIM + NStructReal;
251 for (
int i = comm_comps_start; i < real_comp_mask.
size(); ++i) {
252 if (real_comp_mask[i]) {++num_real_comm_comp;}
255 int num_int_comm_comp = 0;
256 for (
int i = 2 + NStructInt; i < int_comp_mask.
size(); ++i) {
257 if (int_comp_mask[i]) {++num_int_comm_comp;}
260 if constexpr (PC::ParticleType::is_soa_particle) {
266 + num_int_comm_comp *
sizeof(
int);
323 Long
operator() (
int dst_box,
int dst_lev, std::size_t psize,
int i)
const
325 int dst_pid =
m_get_pid(dst_lev, dst_box);
332template <
class PC,
class Buffer,
333 std::enable_if_t<IsParticleContainer<PC>::value &&
334 std::is_base_of_v<PolymorphicArenaAllocator<typename Buffer::value_type>,
335 Buffer>,
int> foo = 0>
344 int num_buckets = pc.BufferMap().numBuckets();
346 std::size_t total_buffer_size = 0;
352 total_buffer_size = np*psize;
359 if (! snd_buffer.arena()->hasFreeDeviceMemory(total_buffer_size)) {
363 snd_buffer.resize(total_buffer_size);
368 const auto plo = pc.Geom(0).ProbLoArray();
369 const auto phi = pc.Geom(0).ProbHiArray();
370 const auto is_per = pc.Geom(0).isPeriodicArray();
371 for (
int lev = 0; lev < num_levels; ++lev)
373 auto& plev = pc.GetParticles(lev);
374 for (
auto& kv : plev)
376 int gid = kv.first.first;
377 int tid = kv.first.second;
378 auto index = std::make_pair(gid, tid);
380 auto& src_tile = plev.at(index);
381 const auto& ptd = src_tile.getConstParticleTileData();
384 if (num_copies == 0) {
continue; }
386 const auto* p_boxes = op.
m_boxes[lev].at(gid).dataPtr();
387 const auto* p_levels = op.
m_levels[lev].at(gid).dataPtr();
388 const auto* p_src_indices = op.
m_src_indices[lev].at(gid).dataPtr();
390 const auto* p_dst_indices = plan.
m_dst_indices[lev].at(gid).dataPtr();
391 auto* p_snd_buffer = snd_buffer.dataPtr();
396 int dst_box = p_boxes[i];
399 int dst_lev = p_levels[i];
400 auto dst_offset = get_offset(dst_box, dst_lev, psize, p_dst_indices[i]);
401 int src_index = p_src_indices[i];
402 ptd.packParticleData(p_snd_buffer, src_index, dst_offset, p_comm_real, p_comm_int);
404 const IntVect& pshift = p_periodic_shift[i];
405 bool do_periodic_shift =
407 || (is_per[1] && pshift[1] != 0),
408 || (is_per[2] && pshift[2] != 0) );
410 if (do_periodic_shift)
412 ParticleReal pos[AMREX_SPACEDIM];
414 AMREX_SPACEDIM*
sizeof(ParticleReal));
415 for (
int idim = 0; idim < AMREX_SPACEDIM; ++idim)
417 if (! is_per[idim]) {
continue; }
418 if (pshift[idim] > 0) {
419 pos[idim] += phi[idim] - plo[idim];
420 }
else if (pshift[idim] < 0) {
421 pos[idim] -= phi[idim] - plo[idim];
425 AMREX_SPACEDIM*
sizeof(ParticleReal));
433template <
class PC,
class Buffer,
class UnpackPolicy,
434 std::enable_if_t<IsParticleContainer<PC>::value,
int> foo = 0>
439 using PTile =
typename PC::ParticleTileType;
441 int num_levels = pc.BufferMap().numLevels();
445 std::vector<int> sizes;
446 std::vector<PTile*> tiles;
447 for (
int lev = 0; lev < num_levels; ++lev)
449 for(
MFIter mfi = pc.MakeMFIter(lev); mfi.isValid(); ++mfi)
451 int gid = mfi.index();
452 int tid = mfi.LocalTileIndex();
453 auto& tile = pc.DefineAndReturnParticleTile(lev, gid, tid);
454 int num_copies = plan.
m_box_counts_h[pc.BufferMap().gridAndLevToBucket(gid, lev)];
455 sizes.push_back(num_copies);
456 tiles.push_back(&tile);
461 std::vector<int> offsets;
462 policy.resizeTiles(tiles, sizes, offsets);
469 for (
int lev = 0; lev < num_levels; ++lev)
471 auto& plev = pc.GetParticles(lev);
474 int gid = mfi.index();
475 int tid = mfi.LocalTileIndex();
476 auto index = std::make_pair(gid, tid);
478 auto& tile = plev[index];
481 auto p_snd_buffer = snd_buffer.dataPtr();
483 int offset = offsets[uindex];
484 int size = sizes[uindex];
487 auto ptd = tile.getParticleTileData();
490 auto src_offset = get_offset(gid, lev, psize, i);
491 int dst_index =
offset + i;
492 ptd.unpackParticleData(p_snd_buffer, src_offset, dst_index, p_comm_real, p_comm_int);
498template <
class PC,
class SndBuffer,
class RcvBuffer,
499 std::enable_if_t<IsParticleContainer<PC>::value,
int> foo = 0>
502 BL_PROFILE(
"amrex::communicateParticlesStart");
509 if (NProcs == 1) {
return; }
517 Long TotRcvBytes = 0;
518 for (
int i = 0; i < NProcs; ++i) {
520 RcvProc.push_back(i);
522 std::size_t acd = ParallelDescriptor::sizeof_selected_comm_data_type(nbytes);
524 rOffset.push_back(TotRcvBytes);
530 for (
int i = 0; i < plan.
m_nrcvs; ++i)
539 rcv_buffer.resize(TotRcvBytes);
555 for (
int i = 0; i < plan.
m_nrcvs; ++i) {
556 const auto Who = RcvProc[i];
557 const auto offset = rOffset[i];
559 std::size_t acd = ParallelDescriptor::sizeof_selected_comm_data_type(nbytes);
573 for (
int i = 0; i < NProcs; ++i)
575 if (i == MyProc) {
continue; }
578 if (Cnt == 0) {
continue; }
598template <
class PC,
class Buffer,
class UnpackPolicy,
599 std::enable_if_t<IsParticleContainer<PC>::value,
int> foo = 0>
606 if (NProcs == 1) {
return; }
610 using PTile =
typename PC::ParticleTileType;
616 auto* p_rcv_buffer = rcv_buffer.dataPtr();
618 std::vector<int> sizes;
619 std::vector<PTile*> tiles;
626 auto& tile = pc.DefineAndReturnParticleTile(lev, gid, tid);
627 sizes.push_back(copy_size);
628 tiles.push_back(&tile);
632 policy.resizeTiles(tiles, sizes, offsets);
642 procindex = (rproc == plan.
m_rcv_box_pids[i]) ? procindex : procindex+1;
645 auto& tile = pc.DefineAndReturnParticleTile(lev, gid, tid);
646 auto ptd = tile.getParticleTileData();
651 int dst_offset = offsets[uindex];
652 int size = sizes[uindex];
659 Long src_offset = psize*(
offset + ip) + p_pad_adjust[procindex];
660 int dst_index = dst_offset + ip;
661 ptd.unpackParticleData(p_rcv_buffer, src_offset, dst_index,
662 p_comm_real, p_comm_int);
#define BL_PROFILE(a)
Definition AMReX_BLProfiler.H:551
#define AMREX_ASSERT(EX)
Definition AMReX_BLassert.H:38
#define AMREX_FORCE_INLINE
Definition AMReX_Extension.H:119
#define AMREX_FOR_1D(...)
Definition AMReX_GpuLaunchMacrosC.nolint.H:97
#define AMREX_GPU_DEVICE
Definition AMReX_GpuQualifiers.H:18
Array4< int const > offset
Definition AMReX_HypreMLABecLap.cpp:1089
#define AMREX_D_TERM(a, b, c)
Definition AMReX_SPACE.H:129
Definition AMReX_MFIter.H:57
bool isValid() const noexcept
Is the iterator valid i.e. is it associated with a FAB?
Definition AMReX_MFIter.H:141
Definition AMReX_PODVector.H:262
size_type size() const noexcept
Definition AMReX_PODVector.H:591
iterator begin() noexcept
Definition AMReX_PODVector.H:617
iterator end() noexcept
Definition AMReX_PODVector.H:621
void resize(size_type a_new_size)
Definition AMReX_PODVector.H:641
MPI_Request req() const
Definition AMReX_ParallelDescriptor.H:74
Definition AMReX_ParticleBufferMap.H:53
This class is a thin wrapper around std::vector. Unlike vector, Vector::operator[] provides bound che...
Definition AMReX_Vector.H:27
Long size() const noexcept
Definition AMReX_Vector.H:50
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE T Add(T *sum, T value) noexcept
Definition AMReX_GpuAtomic.H:198
void copy(HostToDevice, InIter begin, InIter end, OutIter result) noexcept
A host-to-device copy routine. Note this is just a wrapper around memcpy, so it assumes contiguous st...
Definition AMReX_GpuContainers.H:121
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE void * memcpy(void *dest, const void *src, std::size_t count)
Definition AMReX_GpuUtility.H:220
void copyAsync(HostToDevice, InIter begin, InIter end, OutIter result) noexcept
A host-to-device copy routine. Note this is just a wrapper around memcpy, so it assumes contiguous st...
Definition AMReX_GpuContainers.H:233
OutIter exclusive_scan(InIter begin, InIter end, OutIter result)
Definition AMReX_Scan.H:1377
static constexpr DeviceToHost deviceToHost
Definition AMReX_GpuContainers.H:99
static constexpr HostToDevice hostToDevice
Definition AMReX_GpuContainers.H:98
void streamSynchronize() noexcept
Definition AMReX_GpuDevice.H:237
MPI_Comm CommunicatorSub() noexcept
sub-communicator for current frame
Definition AMReX_ParallelContext.H:70
int MyProcSub() noexcept
my sub-rank in current frame
Definition AMReX_ParallelContext.H:76
int global_to_local_rank(int rank) noexcept
Definition AMReX_ParallelContext.H:98
int NProcsSub() noexcept
number of ranks in current frame
Definition AMReX_ParallelContext.H:74
Message Asend(const T *, size_t n, int pid, int tag)
Definition AMReX_ParallelDescriptor.H:1088
int SeqNum() noexcept
Returns sequential message sequence numbers, usually used as tags for send/recv.
Definition AMReX_ParallelDescriptor.H:613
Message Arecv(T *, size_t n, int pid, int tag)
Definition AMReX_ParallelDescriptor.H:1130
Definition AMReX_Amr.cpp:49
void communicateParticlesStart(const PC &pc, ParticleCopyPlan &plan, const SndBuffer &snd_buffer, RcvBuffer &rcv_buffer)
Definition AMReX_ParticleCommunication.H:500
void unpackRemotes(PC &pc, const ParticleCopyPlan &plan, Buffer &rcv_buffer, UnpackPolicy const &policy)
Definition AMReX_ParticleCommunication.H:600
void communicateParticlesFinish(const ParticleCopyPlan &plan)
Definition AMReX_ParticleCommunication.cpp:384
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE void ignore_unused(const Ts &...)
This shuts up the compiler about unused variables.
Definition AMReX.H:127
Arena * The_Pinned_Arena()
Definition AMReX_Arena.cpp:656
const int[]
Definition AMReX_BLProfiler.cpp:1664
std::size_t aligned_size(std::size_t align_requirement, std::size_t size) noexcept
Given a minimum required size of size bytes, this returns the next largest arena size that will align...
Definition AMReX_Arena.H:30
void unpackBuffer(PC &pc, const ParticleCopyPlan &plan, const Buffer &snd_buffer, UnpackPolicy const &policy)
Definition AMReX_ParticleCommunication.H:435
void packBuffer(const PC &pc, const ParticleCopyOp &op, const ParticleCopyPlan &plan, Buffer &snd_buffer)
Definition AMReX_ParticleCommunication.H:336
Definition AMReX_ParticleBufferMap.H:35
Definition AMReX_ParticleBufferMap.H:14
Definition AMReX_ParticleCommunication.H:308
const unsigned int * m_box_offsets
Definition AMReX_ParticleCommunication.H:309
GetPID m_get_pid
Definition AMReX_ParticleCommunication.H:312
AMREX_FORCE_INLINE AMREX_GPU_DEVICE Long operator()(int dst_box, int dst_lev, std::size_t psize, int i) const
Definition AMReX_ParticleCommunication.H:323
GetBucket m_get_bucket
Definition AMReX_ParticleCommunication.H:313
const std::size_t * m_pad_correction
Definition AMReX_ParticleCommunication.H:310
GetSendBufferOffset(const ParticleCopyPlan &plan, const ParticleBufferMap &map)
Definition AMReX_ParticleCommunication.H:315
Definition AMReX_ParticleCommunication.H:19
void resizeTiles(std::vector< PTile * > &tiles, const std::vector< int > &sizes, std::vector< int > &offsets) const
Definition AMReX_ParticleCommunication.H:21
Definition AMReX_ParticleCommunication.H:58
int numCopies(int gid, int lev) const
Definition AMReX_ParticleCommunication.H:70
void setNumLevels(int num_levels)
Definition AMReX_ParticleCommunication.cpp:14
int numLevels() const
Definition AMReX_ParticleCommunication.H:77
Vector< std::map< int, Gpu::DeviceVector< IntVect > > > m_periodic_shift
Definition AMReX_ParticleCommunication.H:62
Vector< std::map< int, Gpu::DeviceVector< int > > > m_boxes
Definition AMReX_ParticleCommunication.H:59
Vector< std::map< int, Gpu::DeviceVector< int > > > m_levels
Definition AMReX_ParticleCommunication.H:60
Vector< std::map< int, Gpu::DeviceVector< int > > > m_src_indices
Definition AMReX_ParticleCommunication.H:61
void resize(int gid, int lev, int size)
Definition AMReX_ParticleCommunication.cpp:22
void clear()
Definition AMReX_ParticleCommunication.cpp:6
Definition AMReX_ParticleCommunication.H:81
Vector< int > m_rcv_box_ids
Definition AMReX_ParticleCommunication.H:90
Vector< std::size_t > m_snd_offsets
Definition AMReX_ParticleCommunication.H:116
Vector< int > m_rcv_box_counts
Definition AMReX_ParticleCommunication.H:88
Vector< std::size_t > m_snd_counts
Definition AMReX_ParticleCommunication.H:117
Long m_NumSnds
Definition AMReX_ParticleCommunication.H:94
void buildMPIFinish(const ParticleBufferMap &map)
Definition AMReX_ParticleCommunication.cpp:213
bool m_local
Definition AMReX_ParticleCommunication.H:304
Vector< int > m_neighbor_procs
Definition AMReX_ParticleCommunication.H:108
void clear()
Definition AMReX_ParticleCommunication.cpp:34
Vector< int > m_rcv_box_pids
Definition AMReX_ParticleCommunication.H:91
Vector< int > m_rcv_box_levs
Definition AMReX_ParticleCommunication.H:92
Gpu::DeviceVector< int > d_real_comp_mask
Definition AMReX_ParticleCommunication.H:125
Gpu::DeviceVector< std::size_t > m_snd_pad_correction_d
Definition AMReX_ParticleCommunication.H:120
Long m_superparticle_size
Definition AMReX_ParticleCommunication.H:126
Vector< Long > m_Snds
Definition AMReX_ParticleCommunication.H:110
Vector< MPI_Request > m_particle_sreqs
Definition AMReX_ParticleCommunication.H:103
static void doHandShakeGlobal(const Vector< Long > &Snds, Vector< Long > &Rcvs)
Definition AMReX_ParticleCommunication.cpp:336
Gpu::DeviceVector< unsigned int > m_box_counts_d
Definition AMReX_ParticleCommunication.H:84
void doHandShakeLocal(const Vector< Long > &Snds, Vector< Long > &Rcvs) const
Definition AMReX_ParticleCommunication.cpp:269
static void doHandShakeAllToAll(const Vector< Long > &Snds, Vector< Long > &Rcvs)
Definition AMReX_ParticleCommunication.cpp:313
Vector< Long > m_Rcvs
Definition AMReX_ParticleCommunication.H:111
Vector< int > m_rcv_box_offsets
Definition AMReX_ParticleCommunication.H:89
Vector< std::size_t > m_snd_pad_correction_h
Definition AMReX_ParticleCommunication.H:119
Vector< std::map< int, Gpu::DeviceVector< int > > > m_dst_indices
Definition AMReX_ParticleCommunication.H:82
Vector< MPI_Status > m_particle_sstats
Definition AMReX_ParticleCommunication.H:102
Gpu::DeviceVector< unsigned int > m_box_offsets
Definition AMReX_ParticleCommunication.H:86
Gpu::DeviceVector< std::size_t > m_rcv_pad_correction_d
Definition AMReX_ParticleCommunication.H:123
Vector< std::size_t > m_rOffset
Definition AMReX_ParticleCommunication.H:113
void buildMPIStart(const ParticleBufferMap &map, Long psize)
Definition AMReX_ParticleCommunication.cpp:48
Vector< MPI_Status > m_particle_rstats
Definition AMReX_ParticleCommunication.H:99
Vector< Long > m_snd_num_particles
Definition AMReX_ParticleCommunication.H:105
Vector< MPI_Request > m_particle_rreqs
Definition AMReX_ParticleCommunication.H:100
Long superParticleSize() const
Definition AMReX_ParticleCommunication.H:128
Gpu::HostVector< int > m_rcv_data
Definition AMReX_ParticleCommunication.H:114
Vector< MPI_Status > m_build_stats
Definition AMReX_ParticleCommunication.H:96
void build(const PC &pc, const ParticleCopyOp &op, const Vector< int > &int_comp_mask, const Vector< int > &real_comp_mask, bool local)
Definition AMReX_ParticleCommunication.H:131
Vector< int > m_RcvProc
Definition AMReX_ParticleCommunication.H:112
Vector< std::size_t > m_rcv_pad_correction_h
Definition AMReX_ParticleCommunication.H:122
int m_nrcvs
Definition AMReX_ParticleCommunication.H:95
void doHandShake(const Vector< Long > &Snds, Vector< Long > &Rcvs) const
Definition AMReX_ParticleCommunication.cpp:262
Gpu::HostVector< unsigned int > m_box_counts_h
Definition AMReX_ParticleCommunication.H:85
Vector< MPI_Request > m_build_rreqs
Definition AMReX_ParticleCommunication.H:97
Vector< Long > m_rcv_num_particles
Definition AMReX_ParticleCommunication.H:106
Gpu::DeviceVector< int > d_int_comp_mask
Definition AMReX_ParticleCommunication.H:125
Definition AMReX_ParticleCommunication.H:34
void resizeTiles(std::vector< PTile * > &tiles, const std::vector< int > &sizes, std::vector< int > &offsets) const
Definition AMReX_ParticleCommunication.H:36