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AMReX_ParticlesHDF5.H
Go to the documentation of this file.
1#ifndef AMREX_PARTICLES_HDF5_H_
2#define AMREX_PARTICLES_HDF5_H_
3
4public:
12 void WriteParticleRealDataHDF5 (void* data, size_t size, hid_t fid) const;
13
21 void ReadParticleRealDataHDF5 (void* data, size_t size, hid_t fid);
22
31 void CheckpointHDF5 (const std::string& dir, const std::string& name,
32 const std::string& compression = "None@0") const;
33
37 void CheckpointHDF5 (const std::string& dir, const std::string& name, bool is_checkpoint,
38 const Vector<std::string>& real_comp_names = Vector<std::string>(),
39 const Vector<std::string>& int_comp_names = Vector<std::string>(),
40 const std::string& compression = "None@0") const;
41
57 template <class F>
58 void WriteHDF5ParticleData (const std::string& dir,
59 const std::string& name,
60 const Vector<int>& write_real_comp,
61 const Vector<int>& write_int_comp,
62 const Vector<std::string>& real_comp_names,
63 const Vector<std::string>& int_comp_names,
64 const std::string& compression,
65 F&& f, bool is_checkpoint=false) const;
66
67
68 void CheckpointPreHDF5 ();
69
70 void CheckpointPostHDF5 ();
71
78 void RestartHDF5 (const std::string& dir, const std::string& file);
79
87 void RestartHDF5 (const std::string& dir, const std::string& file, bool is_checkpoint);
88
95 void WritePlotFileHDF5 (const std::string& dir, const std::string& name, const std::string& compression) const;
96
108 template <class F, std::enable_if_t<!std::is_same_v<F, Vector<std::string>>>* = nullptr>
109 void WritePlotFileHDF5 (const std::string& dir, const std::string& name, const std::string& compression, F&& f) const;
110
119 void WritePlotFileHDF5 (const std::string& dir, const std::string& name,
120 const Vector<std::string>& real_comp_names,
121 const Vector<std::string>& int_comp_names,
122 const std::string& compression) const;
123
137 template <class F>
138 void WritePlotFileHDF5 (const std::string& dir, const std::string& name,
139 const Vector<std::string>& real_comp_names,
140 const Vector<std::string>& int_comp_names,
141 const std::string& compression, F&& f) const;
142
151 void WritePlotFileHDF5 (const std::string& dir, const std::string& name,
152 const Vector<std::string>& real_comp_names,
153 const std::string& compression) const;
154
168 template <class F, std::enable_if_t<!std::is_same_v<F, Vector<std::string>>>* = nullptr>
169 void WritePlotFileHDF5 (const std::string& dir, const std::string& name,
170 const Vector<std::string>& real_comp_names,
171 const std::string& compression, F&& f) const;
172
182 void WritePlotFileHDF5 (const std::string& dir,
183 const std::string& name,
184 const Vector<int>& write_real_comp,
185 const Vector<int>& write_int_comp,
186 const std::string& compression) const;
187
202 template <class F>
203 void WritePlotFileHDF5 (const std::string& dir,
204 const std::string& name,
205 const Vector<int>& write_real_comp,
206 const Vector<int>& write_int_comp,
207 const std::string& compression, F&& f) const;
208
222 void WritePlotFileHDF5 (const std::string& dir,
223 const std::string& name,
224 const Vector<int>& write_real_comp,
225 const Vector<int>& write_int_comp,
226 const Vector<std::string>& real_comp_names,
227 const Vector<std::string>& int_comp_names,
228 const std::string& compression) const;
229
248 template <class F>
249 void WritePlotFileHDF5 (const std::string& dir,
250 const std::string& name,
251 const Vector<int>& write_real_comp,
252 const Vector<int>& write_int_comp,
253 const Vector<std::string>& real_comp_names,
254 const Vector<std::string>& int_comp_names,
255 const std::string& compression,
256 F&& f) const;
257
258 void WritePlotFilePreHDF5 ();
259
260 void WritePlotFilePostHDF5 ();
261
262 void
263 WriteParticlesHDF5 (int level, hid_t grp,
264 Vector<int>& which, Vector<int>& count, Vector<Long>& where,
265 const Vector<int>& write_real_comp, const Vector<int>& write_int_comp,
266 const std::string& compression,
267 const Vector<std::map<std::pair<int, int>,IntVector>>& particle_io_flags, bool is_checkpoint) const;
268
269protected:
270
271template <class RTYPE>
272void ReadParticlesHDF5 (hsize_t offset, hsize_t count, int grd, int lev, hid_t int_dset, hid_t real_dset, int finest_level_in_file, bool convert_ids);
273
274#endif
offset
Array4< int const > offset
Definition AMReX_HypreMLABecLap.cpp:1089
CheckpointHDF5
void CheckpointHDF5(const std::string &dir, const std::string &name, const std::string &compression="None@0") const
Writes a particle checkpoint to file, suitable for restarting.
WritePlotFilePreHDF5
void WritePlotFilePreHDF5()
CheckpointPreHDF5
void CheckpointPreHDF5()
WritePlotFilePostHDF5
void WritePlotFilePostHDF5()
ReadParticleRealDataHDF5
void ReadParticleRealDataHDF5(void *data, size_t size, hid_t fid)
Read a contiguous chunk of real particle data from HDF5 file.
ReadParticlesHDF5
void ReadParticlesHDF5(hsize_t offset, hsize_t count, int grd, int lev, hid_t int_dset, hid_t real_dset, int finest_level_in_file, bool convert_ids)
WriteParticlesHDF5
void WriteParticlesHDF5(int level, hid_t grp, Vector< int > &which, Vector< int > &count, Vector< Long > &where, const Vector< int > &write_real_comp, const Vector< int > &write_int_comp, const std::string &compression, const Vector< std::map< std::pair< int, int >, IntVector > > &particle_io_flags, bool is_checkpoint) const
WritePlotFileHDF5
void WritePlotFileHDF5(const std::string &dir, const std::string &name, const std::string &compression) const
This version of WritePlotFile writes all components and assigns component names.
RestartHDF5
void RestartHDF5(const std::string &dir, const std::string &file)
Restart from checkpoint.
WriteHDF5ParticleData
void WriteHDF5ParticleData(const std::string &dir, const std::string &name, const Vector< int > &write_real_comp, const Vector< int > &write_int_comp, const Vector< std::string > &real_comp_names, const Vector< std::string > &int_comp_names, const std::string &compression, F &&f, bool is_checkpoint=false) const
Writes particle data to disk in the HDF5 format.
CheckpointPostHDF5
void CheckpointPostHDF5()
WriteParticleRealDataHDF5
void WriteParticleRealDataHDF5(void *data, size_t size, hid_t fid) const
Write a contiguous chunk of real particle data to an HDF5 file.